NONHSAT001338

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT001338

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2493 nt

Genomic location

chr1+:20356772..20359646

Exon number

2

Exons

20356772..20358327,20358710..20359646

Genome context

Sequence
000001 CAGGGAAACA TGTGAGCAAA GGTCTCTGTG TCATAAATAA GGTTAAGGAA AGGAGCTGTG CCTTGATGTG AGAGTAGGCC 000080
000081 AGATTTATGT TTGACTTTAC ACAAGCATCT CAGTGCGGTA AAGAGCAGTA TTGCCACCAG CATGTCTCAC CTCCAGCCAT 000160
000161 AAGGCGGTTT TCTCCTATCT CAGTAAATAT AATGTATGAT CGAGTTTTAC ACCGAGACAT TCCATTCCCA GGGATGAGCA 000240
000241 GGAGACAGAT GCCTTCCTCT TATCTCAATT GCAAAGAGGC CTTCCTCTTT CACTAATCCT CCTCAGCACA GGCCCTTTAT 000320
000321 GGGTGCCGGG CTGGGGGATG GTCAGGTCTT TCCCTTCCCA TGAGGCCATA GCTCAGGCTG TCTCAGTGGG GAGAATCCTT 000400
000401 GGACAATACC CAGGCTTTCT TGGGCAGAGG TCCCTGCGGC CTTCTGCAGT GCACTGTGTC CCTGGGTACT CGAAACTAGA 000480
000481 GAATGGTGAT GACTTTTACC AAGCATACTG CCTGCAAACA CATTTTTAAC AAAGGACATC CTGCACAGCC CTAAATCCAT 000560
000561 TAAACCTGGA GTCAACACAG CACATGTTTC TGTGAGCACA GGGTTGGGGC TAAAGTTACA GATTAACAGC ATCTCAAGGC 000640
000641 AGAATAATTT TTCTTAGTAG AAAACAAAAT GGAGTTTCTT ATGTCTTCTT TCTACATAGA CACAGTAACA GTCTGATCTC 000720
000721 TCTTTCTTTC CCTGACAGTT GTTAGTAAGG GTATCCCCTG TGAAGGCTTG TTGGTCAGGG AGGAGATGAA GGCTGTTTGG 000800
000801 TTTTGGAGAG ACAGAGAGAG GGAGAGAGAG AAATGGGTTT TTGTAATTAA TAGCCATTGT GGTTCTGATA GGGCTGAAGG 000880
000881 ATATAGGTTG CAGTCGAGAG AATGGATTGG CCGACTAGGT GAGATGTAGG TTTATTTTGG ACCGGGTTCG TGTGGTTAGA 000960
000961 TTAACAGGAA GGGCTGTGAA CAGCTGGATT TGTGTGGACA AACAAATCTA ACAGTTGGAA AAAAGAGGGG ATCGTGACTG 001040
001041 ATTTAAGAGG TAATGTATGA AGTTGACAAA GGGGGCCCTA CTGCCAGAGG CTGGGGGTGG AGACTTAGAG TATCTCACAA 001120
001121 AGAAGACAAA AGGAGATTTG AGTGGGAGAG AAATTTTGGA AGATACCCTG CAGCCATAGC TCCTGGATTA GTGTAGGAAA 001200
001201 TAGGAGTGGT CTATCCAGGG ATGTGGGGAA GGAATAACAG GAAAGATCTG AAACAATGTA CCAGATAAAA GATTTGAAAT 001280
001281 TGGAGGAAGA GAGTGTTATG GACCAGGGCC TCCTGGATTG GCAACTTCTG GAATTTTTGT TAAGTGCCGC TAGGTTAGTC 001360
001361 CTGTAAGAAA GGAAGAATTT TGGGGTGGGG GGTGTGGGGA GGGAATTTCT GGATGTAAAT TTGGTGCTCT TTTTAGTTTG 001440
001441 GAATGGTGTA TCCCGTGTAG AAAGGATGTT AGCTTTCCCG ATGTGGGAGT AATTAGAATA ACCTGGTGAG CACCCATCCA 001520
001521 CTTAGATTGG AGAAGGGAGG AGGAGAAGTC TGTGATTGTT TAGAGTCTTC GCTAGCTATT GGTTAACCTG TGAAACAAAT 001600
001601 GCTCGCCTGT TGTCTGACTG GATAGAAGAG GGGAGTCCAA ATGGGAGGAT AATGCGGGTA ATACAGAGAA TAGAAGTGAC 001680
001681 AGTGTGTGTG TGGTTTTTTT TTTTTTGATG GTGGTAGGAA AAGTTTCTGT CCATCCAGAG AATGTATCTA TTATTGTCAG 001760
001761 AAGGTACTGG ATTTGTTTTA CAGGGGGTCA TGTGAGTGAA GTTGATTTGC CAGTCAGTCT TGCCCTGGCA GGTGTCTTCA 001840
001841 GGCCTGGTGT GTGGGGAAAG GAGGTGGTTT GATAGCTCCC TGAGGGGAAG TTTGAGTGCA AAGGGAACAT GCCTTAGTAA 001920
001921 TATCTTTGAG ATTGGCAGTC ATGGCAGGAG AATGTGTATA AGAGTTGGCA TAGGGGGCGG TAACCAGTAT GAAAATGGTT 002000
002001 GTGTACATAT GAAAGTACAG AAGGTCCTGG AACTTGGGCA AGACAATTTT ATTACTGAGG TAAAACCATC CTCCTTCCTG 002080
002081 AATGGCATCA GCCTGGATGA GTGAGGTTTG TTCTTCCTGG GTATATACAG GATGTATGTT GGGAAAAATG GGCAGTAATG 002160
002161 ATGGGGTTTT AAGGGGTGCC TGCCAGGCTG CTGAATTTGC TAAGAAGTTT TCATTGGTTT TGGCATTTGT AGCCTTTTGG 002240
002241 TGTTCCTTGC AATAGATAAT GGTGGCCTTT AGTGGTGGTT CAGCCACCTC CAGCAGTTTG TGTATGAGTT TGCCATTTCC 002320
002321 TATGGGGATT CCTTTTGTAG TTAGAAAACC CCTTTTCTGC CAGATTAAGA CCTGAGAATG TAGGATATGG TATGCATATT 002400
002401 TGGAATTGGT GTAAATTGGT TAACCCTTTC CTTTTTCCTT TTGCTAGGAT GGGCAACTAG CTCCTCTTGT TGACAGGTAG 002480
002481 TTCTGCCTGT TGA
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Predicted Small Protein

Name NONHSAT001338_smProtein_86:295
Length 70
Molecular weight 8149.3165
Aromaticity 0.130434782609
Instability index 92.0594202899
Isoelectric point 9.01947021484
Runs 11
Runs residual 0.0200889654183
Runs probability 0.035763035763
Amino acid sequence MFDFTQASQCGKEQYCHQHVSPPAIRRFSPISVNIMYDRVLHRDIPFPGMSRRQMPSSYL
NCKEAFLFH
Secondary structure LLLLLLLLLLLLLEEEELLLLLLLEEEELLLEEEEEELEEELLLLLLLLLLLLLLLLLLL
LHHHHHHLL
PRMN -
PiMo -