NONHSAT001749
Revision as of 19:19, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001749 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1631 nt |
Genomic location |
chr1-:26144715..26146345 |
Exon number |
1 |
Exons |
26144715..26146345 |
Genome context |
|
Sequence |
000001 GGGAGCGCGG CCCCCGAGTG GGCGAGGCGC TGGCGGCTGT AGGCTCCGAT ACCGCGGAGC ACACTCCCCT CCATCGAGAC 000080
000081 CGTGCCCCCG CGGGGTCTGT GTCCCCGGGA GGAGTTGGCT GCGTTTGGAG ATCCCTCGGC CTGGTATTCG TCGCGTCTCC 000160 000161 CTGCTTGTTG CTCTCCACGT TTAGCCCCAT CCGACTTCTG GAAGCCCAGG GGTGTGTCGC TCGACCCCTA AAATATGCTC 000240 000241 CTACCCCTAG GGCAAACTTC AGAATCCTCA CCCTGGCCCC CTTCCCAGTT CTTGGTTCCC AGGCAGGTCC CTTTGCAAAG 000320 000321 CCTCTCTCCA GCAAGAATGC GCAGAATGGG CCTCTTTCTC CTCTTGACTC CTGCCCTCCA GCACTTTGCA GCTTTCTTCT 000400 000401 ATTTTAGCCT CTCTCTCTCT CTCTcacaca cacacacaca cacacacaca cacacacaca cacacacGGT ATATTCAATG 000480 000481 AGTTTGCTTA TTAGATGGGT ACTTGATGTA CAAGACTCCA GAGGCTCTGT GGGAAGAGCC ACATTCCTTC CAGGCTCACT 000560 000561 AACCCACTCC CTCTTTGTGC TCCAGCCCTC ACTGTCTTGG TCTGTGGCAT GCAGTTCCTG GGTCACATTT CCTTCTCTGC 000640 000641 CTTCAGCACA GCCTCGGGCT GTGCCTGGCT CCCAGGCTGG AGTTCCTTGG TTCCAAAGCC TGCAGTCCCC TCTGCCAGAG 000720 000721 Acagagctgg tttcatgggt gaacagccca tgcagtcaca acgggccgca tgctcagaat cctgtacttg gtttagtact 000800 000801 ttgctgttgc cgtcttgaaa tgattttcta ataggggttc ttgtgttttc attttgcacg gggctgtgca aattatgtga 000880 000881 ctggtcctgG CTAGAGACCT CAGAGGTCGT CCACCCTGAT CTCCACCATA TCTCAAACGC TGAAGATTGA CTTCCAGGTC 000960 000961 TGGCCCTCTT CCCAGGATGG CACATTGTGT TTTAATCATT ACCTTTCCCT CCTGTGCGAT GGCGGATCAT GCAAGTCCAC 001040 001041 GCTGGCTGTC TGTCCTGGGT GTAGATGCTG ATTTGGTGTC CCACTCAGAT CCCCTTGCAG GAAGAACgga gctccctacc 001120 001121 tgggaatttc cttcacctcc caagccaatg actgataaaa ggtccaaaag gccagttcag ctctgcagtg tggtttatgc 001200 001201 cccacagctc ttccactgtg ggtcaggcca aggctgggct gagactgttc ctgctcagca tttttccttt ccctcttctg 001280 001281 cttccttcct tcttttactg gtttttctgg aagtacactc ccccccagcc ccaccaaaca aacaaaacaa acaaacaaaa 001360 001361 aaacacttca tgcctgtctc aggctctgct tttaagACAA TGATTTTAAC TCCCAGATCT CTCTCAACAG AGAGCACCAG 001440 001441 ATTCTCAAAA CAGTAAGTCC TACCACTTGT TCTATCGTAA AACTTATTTT GGGCAAGTCA CTCAAGCCTT CGATAGGTAA 001520 001521 GATAGTACCT GAAAGCATTC CAGCTCAACT CTGCCCCAAG AGGGAGCCAC CCCATGGAAG GACGGAGCTG AGCAACATGC 001600 001601 CACTCAAAGG AAAAGCACTT AGAACCACTC T |
Predicted Small Protein
Name | NONHSAT001749_smProtein_608:817 |
Length | 70 |
Molecular weight | 7410.407 |
Aromaticity | 0.115942028986 |
Instability index | 68.4449275362 |
Isoelectric point | 7.75494384766 |
Runs | 10 |
Runs residual | 0.00559621179509 |
Runs probability | 0.0344815403639 |
Amino acid sequence | MQFLGHISFSAFSTASGCAWLPGWSSLVPKPAVPSARDRAGFMGEQPMQSQRAACSESCT WFSTLLLPS |
Secondary structure | LEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLHHHHHHHHLLLL HHHHEELLL |
PRMN | - |
PiMo | - |