NONHSAT001861

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT001861

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2788 nt

Genomic location

chr1+:27287031..27289818

Exon number

1

Exons

27287031..27289818

Genome context

Sequence
000001 CCCGCTCGAG TGCTCGGCCC GTTCAGCCTA GTCCGGGTAG GTGAGGTGTG GCGGGGAGGG GTCGAGAGGC GCTGGGGCTC 000080
000081 AGTCTCCTCT TCTGTTCAAC AGGCTGGTGG TCCTGTCAGT CTCTGAGcac ctgtggaact tctgcccggc cgtaaagctc 000160
000161 caactcaaag ggaagctctc ttctgggaag ctttccctga tcctgtctgt ttttctgttg gttagaacag tccctgtact 000240
000241 cagcacactg tcgttttgtt gtcttctgtc tcctccttta gcctcctacc ttgcagggtt tggtcttgtt cccctgtgtt 000320
000321 cctggtgctc agcacaggtc ctggcacata ctaggtgttc aacaaatatt ttccactgaa tgaGGCCCTG GGCCCCAATT 000400
000401 TCTCCCTTTG CCCTGAGGCA GAACTGGGAG CCTGGGCCGC TGATCAGTTT ACCTTTTCTT TTGTTCAGAG AAATCTGCAG 000480
000481 GTAAAGACAG GAACCTCAGC TCTGAGGCCC CGAGTAGGGT AGAGGAGGGG GACCGGATAT GCAGCTCTGA AAGATACATC 000560
000561 CAGGATCAGA AGTGGTGGCC AAAATGGGCC ATGGTCACTA CATCCAAAAA AGGTCTCTGC AAGAGGCAAC ACCATTGAAT 000640
000641 GTCAATAAGG CAAGGCTCAG ACTATTCTGG GTTACTGTTC CCCTTAATAT TAATAACAAC TCAATAACTT AACAATAGCA 000720
000721 TTAATAAACA AGTGACTTgg ccgggcgcag tggctcatgc ctgtaatccc agcactttgg gaggccgagg cgggaggatc 000800
000801 gcgaggtggg agtttgagac cagcctggcc aacatagtga aacccagtct ctactaaaaa tacaaaaaat tagcctagca 000880
000881 tggtagcaag tgcctgtaat cccagctact cgggaggctg aggcaggaga atggcttgaa cccagcaggc agaggttgca 000960
000961 gtgagccgag atcgcgccat tgcactccag cctgggcgac agagcgagac tctgtctcaa ataaacaaaa caaacaaaca 001040
001041 aacaaGTGAC TTTTAGGGAG CATCTCCAGG AGCCATGCAT GCCGAAGCCG TTAATctgtg aagtgggtca ggtattatca 001120
001121 tatccatttt acagtaagag gaaactgaag cttagagagg ggacattgtt tgctcaggCA GTTGGCACAA ACtgactttt 001200
001201 ggcaaggcac tttccttctc taaacctaat ctctggagat agtagtacct ctctttaact gggaggatta aaagagatca 001280
001281 tggatgcaaC AGGAAGATAT CACTGGGATG CATTAGGCAT AGGTGTTCAA TTTCCACCAG AGACCCTCCA TCCCAGCGCC 001360
001361 TCCCACCACA TCTTGTCCAC ATTCCCTCCT GAGGAAAGTG CACATTGTAT TCTTATTTGG AGCTCAGAGA ATGAGTCACA 001440
001441 TCCTCACTTC ACAGTCACat cttgtgcagt tgaacatctg tgtactctaa aacctagcaa gtccattcct atggtacagc 001520
001521 cacagtaagc tcttgtgcaa tgcaccagga gagaatgtat acaagaatgt tactagaaac attgtttgtg gtagccccaa 001600
001601 accgaaaaca cggaaatgct actgacagga gatagagaaa tgtgggatat tcatgcaaag gaattaatta tagagcagta 001680
001681 gaaaatgaat gaaaaatagc aacatggttg gatcatggta atataatatt ggattgaaaa aaggcaaatc tcagaagact 001760
001761 acatatggaa tgacatcctt tatatatgat tcaaaaataa ctagaactac tgcatctaag cataatattt ggttgaacca 001840
001841 tatgaatttg ctgttatttg acctgttttg atctaaaagt aatggcagat tcatgtgctt cagcctaatt tttacgtgaa 001920
001921 aaaaaactaa gaaaagagca aggcgttggg tgcaatagcc tgggcctgta atcccagcta cttgggaggc tgaggcaaga 002000
002001 gaatctcttg agccaaggag ttcaagacca gcctgggcaa catagcaaga ccctatctca aaaaagaaaa gaaagaaaag 002080
002081 agcaagggaa tgagaaacac aaagttcaga ataatgaata cctggggggc taggcatggt ggctcatgcc tataatccca 002160
002161 gcactttggg aagccaagga tttgggaggt ttggttgagc ccaggacttc aagaccagcc tgggcaacat agaaggacct 002240
002241 gtctctatgg aaggaaaaaa aaaaaaaaaa aaaggctggt catgcatctg tggtcccagc tacttgggag gctgtggcag 002320
002321 gaggattgct tgagcccagg aggtcaaggc tgcagtgaac catattaaca ccactgccct gccctccagc ctggAacaca 002400
002401 ccacacacac acacacacac acacacacac acacacacac acacacaAAA TTACCTGGGG GAGGATGCAG GGATCCTCCT 002480
002481 ATTAAATCTA CCTGtgggag agaaacccat aggtagattt aatttttagc aatgttctgg tttttgtgaa tagtggattc 002560
002561 aggggctttc attttataat GAATGAATGA AAAAATAGAA GTTTATGCTC TAATGCTAAA TAATTAGAGT TAGTGTCACT 002640
002641 TGCAAAGTTC TCAAGATACG CAAACACATG AGAGCCTAGG GTCTTAttta ttttatttta ttttatttta ttttattttt 002720
002721 ttgagatgga gtctcgcttt gtcaccaggc tggagtgcag tggcacgatc tcggctcgct gcaacctc
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Predicted Small Protein

Name NONHSAT001861_smProtein_1769:1870
Length 34
Molecular weight 3972.5895
Aromaticity 0.151515151515
Instability index 47.2333333333
Isoelectric point 8.29425048828
Runs 5
Runs residual 0.0326086956522
Runs probability 0.02231054584
Amino acid sequence MTSFIYDSKITRTTASKHNIWLNHMNLLLFDLF
Secondary structure LLEEEELLLLLLLLLLHHHHHHHHHHHHHHHLL
PRMN -
PiMo -