NONHSAT001861
Revision as of 19:19, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001861 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2788 nt |
Genomic location |
chr1+:27287031..27289818 |
Exon number |
1 |
Exons |
27287031..27289818 |
Genome context |
|
Sequence |
000001 CCCGCTCGAG TGCTCGGCCC GTTCAGCCTA GTCCGGGTAG GTGAGGTGTG GCGGGGAGGG GTCGAGAGGC GCTGGGGCTC 000080
000081 AGTCTCCTCT TCTGTTCAAC AGGCTGGTGG TCCTGTCAGT CTCTGAGcac ctgtggaact tctgcccggc cgtaaagctc 000160 000161 caactcaaag ggaagctctc ttctgggaag ctttccctga tcctgtctgt ttttctgttg gttagaacag tccctgtact 000240 000241 cagcacactg tcgttttgtt gtcttctgtc tcctccttta gcctcctacc ttgcagggtt tggtcttgtt cccctgtgtt 000320 000321 cctggtgctc agcacaggtc ctggcacata ctaggtgttc aacaaatatt ttccactgaa tgaGGCCCTG GGCCCCAATT 000400 000401 TCTCCCTTTG CCCTGAGGCA GAACTGGGAG CCTGGGCCGC TGATCAGTTT ACCTTTTCTT TTGTTCAGAG AAATCTGCAG 000480 000481 GTAAAGACAG GAACCTCAGC TCTGAGGCCC CGAGTAGGGT AGAGGAGGGG GACCGGATAT GCAGCTCTGA AAGATACATC 000560 000561 CAGGATCAGA AGTGGTGGCC AAAATGGGCC ATGGTCACTA CATCCAAAAA AGGTCTCTGC AAGAGGCAAC ACCATTGAAT 000640 000641 GTCAATAAGG CAAGGCTCAG ACTATTCTGG GTTACTGTTC CCCTTAATAT TAATAACAAC TCAATAACTT AACAATAGCA 000720 000721 TTAATAAACA AGTGACTTgg ccgggcgcag tggctcatgc ctgtaatccc agcactttgg gaggccgagg cgggaggatc 000800 000801 gcgaggtggg agtttgagac cagcctggcc aacatagtga aacccagtct ctactaaaaa tacaaaaaat tagcctagca 000880 000881 tggtagcaag tgcctgtaat cccagctact cgggaggctg aggcaggaga atggcttgaa cccagcaggc agaggttgca 000960 000961 gtgagccgag atcgcgccat tgcactccag cctgggcgac agagcgagac tctgtctcaa ataaacaaaa caaacaaaca 001040 001041 aacaaGTGAC TTTTAGGGAG CATCTCCAGG AGCCATGCAT GCCGAAGCCG TTAATctgtg aagtgggtca ggtattatca 001120 001121 tatccatttt acagtaagag gaaactgaag cttagagagg ggacattgtt tgctcaggCA GTTGGCACAA ACtgactttt 001200 001201 ggcaaggcac tttccttctc taaacctaat ctctggagat agtagtacct ctctttaact gggaggatta aaagagatca 001280 001281 tggatgcaaC AGGAAGATAT CACTGGGATG CATTAGGCAT AGGTGTTCAA TTTCCACCAG AGACCCTCCA TCCCAGCGCC 001360 001361 TCCCACCACA TCTTGTCCAC ATTCCCTCCT GAGGAAAGTG CACATTGTAT TCTTATTTGG AGCTCAGAGA ATGAGTCACA 001440 001441 TCCTCACTTC ACAGTCACat cttgtgcagt tgaacatctg tgtactctaa aacctagcaa gtccattcct atggtacagc 001520 001521 cacagtaagc tcttgtgcaa tgcaccagga gagaatgtat acaagaatgt tactagaaac attgtttgtg gtagccccaa 001600 001601 accgaaaaca cggaaatgct actgacagga gatagagaaa tgtgggatat tcatgcaaag gaattaatta tagagcagta 001680 001681 gaaaatgaat gaaaaatagc aacatggttg gatcatggta atataatatt ggattgaaaa aaggcaaatc tcagaagact 001760 001761 acatatggaa tgacatcctt tatatatgat tcaaaaataa ctagaactac tgcatctaag cataatattt ggttgaacca 001840 001841 tatgaatttg ctgttatttg acctgttttg atctaaaagt aatggcagat tcatgtgctt cagcctaatt tttacgtgaa 001920 001921 aaaaaactaa gaaaagagca aggcgttggg tgcaatagcc tgggcctgta atcccagcta cttgggaggc tgaggcaaga 002000 002001 gaatctcttg agccaaggag ttcaagacca gcctgggcaa catagcaaga ccctatctca aaaaagaaaa gaaagaaaag 002080 002081 agcaagggaa tgagaaacac aaagttcaga ataatgaata cctggggggc taggcatggt ggctcatgcc tataatccca 002160 002161 gcactttggg aagccaagga tttgggaggt ttggttgagc ccaggacttc aagaccagcc tgggcaacat agaaggacct 002240 002241 gtctctatgg aaggaaaaaa aaaaaaaaaa aaaggctggt catgcatctg tggtcccagc tacttgggag gctgtggcag 002320 002321 gaggattgct tgagcccagg aggtcaaggc tgcagtgaac catattaaca ccactgccct gccctccagc ctggAacaca 002400 002401 ccacacacac acacacacac acacacacac acacacacac acacacaAAA TTACCTGGGG GAGGATGCAG GGATCCTCCT 002480 002481 ATTAAATCTA CCTGtgggag agaaacccat aggtagattt aatttttagc aatgttctgg tttttgtgaa tagtggattc 002560 002561 aggggctttc attttataat GAATGAATGA AAAAATAGAA GTTTATGCTC TAATGCTAAA TAATTAGAGT TAGTGTCACT 002640 002641 TGCAAAGTTC TCAAGATACG CAAACACATG AGAGCCTAGG GTCTTAttta ttttatttta ttttatttta ttttattttt 002720 002721 ttgagatgga gtctcgcttt gtcaccaggc tggagtgcag tggcacgatc tcggctcgct gcaacctc |
Predicted Small Protein
Name | NONHSAT001861_smProtein_1769:1870 |
Length | 34 |
Molecular weight | 3972.5895 |
Aromaticity | 0.151515151515 |
Instability index | 47.2333333333 |
Isoelectric point | 8.29425048828 |
Runs | 5 |
Runs residual | 0.0326086956522 |
Runs probability | 0.02231054584 |
Amino acid sequence | MTSFIYDSKITRTTASKHNIWLNHMNLLLFDLF |
Secondary structure | LLEEEELLLLLLLLLLHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |