NONHSAT002581
Revision as of 19:22, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002581 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3592 nt |
Genomic location |
chr1-:40026488..40030198 |
Exon number |
2 |
Exons |
40026488..40027875,40027995..40030198 |
Genome context |
|
Sequence |
000001 AAGTGCTATA CGCCAGTCTG GGCCTCGTCC AACTCTTCGC CATCTGGCTC CAACTGGTAA TGCTCCGGCC TCTCGTGGCC 000080
000081 TCCCTACTAC CACTCAGAGA GTCGGTGAGC AAACTGGCCT TTAGAAGTGT GGCCTGGGGA GGAGGGAGTC AGGATGACTA 000160 000161 GGCTCTGTCC TGGGTTGGTC AGTTTGTTGG GCTCGAATTT Atcgagtcct ggttctgtaa tcttagctgt gtgcttaggt 000240 000241 ggccacttCA GGAGCAGAGA AACAGTATGA GTTCTAGGTG TGTCAGTTGC TTTTAACATT CTTTGCTCAT CGGTGACCTA 000320 000321 TGTGAAAAAG GTTAGTTGTA GAAGTTTGCT AGCTGGATGA CCACAGAGGC AGCTTGTTCT TTTGGGTGGG GTGAGGAATA 000400 000401 CAAGGAAACA GTGTATACAG AATATGTCTT GTATTCCAAG ATGTGGAAAG AGTTGTATGT TATCCTTTGG CTCATCCTCG 000480 000481 AAAGTAGTAG TGGCCCCCTG TGCAATGTGT TGCGTAAACG TGCTTTGAAA TTTCTCCTTC CGTGGGACGT GGCCAGTTGG 000560 000561 ACATCTGCCG CCAACACTGA TGTGCATTTG CTGGTCTGTT GTAGGGTCTG AGTGCCCGGA CCGCTTGGCT ATGGACTTTG 000640 000641 GTGGGGCTGG TGCCGCCCAG CAAGGGCTGA CTGACAGCTG CCAGTCTGGA GGTGGTATTG GATGCACACA GAAGGGGGAA 000720 000721 AGATGGGATT TGACGGGTCT TTGCCCAGAC TGATGGGCTT TAATTGTATT TGTTCTTTCC CTAAGGCGTT CCCACAGCTG 000800 000801 TGCAGAACTT AGCGCCACGC GCTGCTGTTG CTGCTGCTGC TCCCCGGGCT GTTGCCCCCT ACAAATACGC CTCCAGTGTC 000880 000881 CGCAGCCCTC ATCCTGCCAT ACAGCCTCTG CAGGTGAGGT TCACCAGACA GAATGCTTAA AAGGATTTCC CCCATTTCCA 000960 000961 CTTGATGTAA AAGAAGCTGT GCTTttgatt ccttcaacag gtattaaatg cctgctctgt gttatgacgc tatgttctga 001040 001041 ttcactgtcc ctgcccttca ggggctcact agtgggaaag aAGGGGCTTA AAAGTGCTCT GCCTGATGCC AGTTCACTCA 001120 001121 GAAATGCCTC AGAGCGGGCA GCCAGTGCTT CCTCTTCTGT TTGTACGAAA TAATGTGCTC ATTCAGCTGT TTGAGCCTCC 001200 001201 AGGTCACTTC CGCATCCAAT GACCTATTGG ATCCTTGGCT GCTCTGCAAG ATGATTGGTA CATTAATGCA GGAAATAACT 001280 001281 TCAACTTACA GATCGGATGT TCAGCTTCAA AGATGTAAAG TGTGTGTAGG AGGTGAAGGG GTTGAACCTA GAGCTTAGAT 001360 001361 TTTCTAAGCT GTAACTTGCT GTCTCTAGAC CTGTGCTCTA GATGCAACTA GTTTGTTTCA GAGCCTAATA GCAATTTGCT 001440 001441 GTGGAGGTGT CACCCTAAGC CTTCAGGCCC ATAAGCTGCT TAGGAGATTA CTCTTTAACT GTCCTGTCTC ATACTCTCTA 001520 001521 AGTTGGGGAT TTCCTAGAAC TTGATGCTAT GTAAAATACC TTTTCTTTGC AAGGCTTTGA CTAGCATTGA CGTTGCATGT 001600 001601 TGACCGTTTT TAAGCATTTG ATACAAAAAC ATTTGGTAGA ATTAAGGTGA TGTGGAATGT AATTATAAAT GTGTTGATAT 001680 001681 TTACTCCCTT TGATCCAATC TGCACTGAGA TTTACCCTAA AGGAAAACTA ATTTTCAGGA AAAGGTTATA TACAAGTGTT 001760 001761 TACCCTTATT TATATCAAGG CTTTTCATTC TTGAGTAACT TTGGGTGTAT TAAGGAAATG TCAGAAAATG CTTGCCTAGC 001840 001841 ACTATAGGTT TGTTTTATTA TTTACGTTTC ACTTCGCTTT CTGATAGCAT GCCATTTTCA TTGTAATTGG TTGTGTTTAT 001920 001921 GTCCATACCA CTCTGTTCCT CAACACACCC CTCAATCCTT CAAGGACTGA AATTAGTTCC TTTAGAGCAA GGACAGCCAC 002000 002001 CTCCTCTCCT CTTTCACATA GTCAGATGTT CAGATATTGA ACAGGCACTC AACCACCATC AGGTGTTGTC CTTTCCTCAG 002080 002081 TGCTAACCCA CTGCCTTTCC TGGTTCCCAG GCACCCCAGC CTGCGGTCCA TGTGCAGGGG CAGGAGCCAC TGACTGCCTC 002160 002161 CATGCTGGCT GCAGCACCCC CCCAGGAACA GAAGCAGATG CTGGGAGAAC GCTTGTTCCC ACTCATCCAA ACAATGCATT 002240 002241 CAAATCTGGC TGGGAAGATC ACGGGAATGC TGCTGGAGAT AGACAACTCT GAGCTGCTGC ACATGTTAGA GTCCCCCGAG 002320 002321 TCTCTCCGCT CCAAGGTGAG CTGGGGCTCA GACCCTGCAG CTTCAGTTCT CAGCTTGGGA AGACTGGGGG CAAACTTGGA 002400 002401 TGCCCAGGTG CAGCAGAAAG TGGGATCTGC TGCCCCCAGG ACCCCTCTCG TCATGCCTTG ACTGTGACTG GAGGCTGCAG 002480 002481 TGGGTATTTG GGAAAGTAGT TAGCACCAGA AGCCTAGGGA TCATCTGTAC AGTTGGCTTT GGTCCACCAC TAGGTCTGGG 002560 002561 CACTGGGGAG GGGTGGAGTA GCTCTCCTAG ATTCACTGAC CACCTGAAGA TTTCTCGCAG GTGGATGAAG CTGTAGCAGT 002640 002641 TCTACAGGCT CATCATGCCA AGAAAGAAGC TGCCCAGAAG GTGGGCGCTG TTGCTGCTGC TACCTCTTAG ACAAGGAAAA 002720 002721 ACCGTATGTG TGGCTATTTT CATTTTTGTT CCTATGAGCA TTGTTCCTAT GAGCATTGTC TTTGTGGTTT GACCTGAGGT 002800 002801 TGTATATATG CTCACTGCTT AGCTCTGGGA ATACAATAAG TACAGTTAGT TACACGGAGT GTGTTGCAGG TGACTTCTTA 002880 002881 TCATGAGGAC TGTGGACTTT GTCTGCAGGA GCTTGAGTGA ATAATAAAAC TAGTACTGGT TGATGGTTGT AGGTGTCTCC 002960 002961 AGATAGGGAA AGAAGAGACA GTAAAATAAG CTAAGGAAAA AGCACATGGT AAGGACCAGA GCTGGTGTGT TGGGAGGGTT 003040 003041 GACTTGGCAT AGTCATGACC CTCTTGTCAA GGGCCTCAGG AGCCTtgtca tctagtggta aagaccagag atgctgctaa 003120 003121 atgttgtaca gtacacagga ggacagaccc aacagaatgt ccaaagtgtc aatagcactg aggttgagaa actctCTTCT 003200 003201 AGAATACCTT CCTTTATCCA CTATATGTTA ATGAATCTAA ATTATTTGAT TATGCATTTA TTTGTGTTGG TGCTTTTCTT 003280 003281 TACAGGATTC AAAAGCCAAA TAACCCCTTA TGGAATTCAA CTCAAGGTTT GAAGACTTCC TAGCTTGTCC TATGGACCTC 003360 003361 AACACCAAGG ATTACAAATT GCAAATTTAA TAGGTCATTT TGTATCAAAA GGTCAATTAT GAAGCACCTA GAATTTTTCA 003440 003441 ATTATACGAA TATGTTCTTT GGGTTCTGCT GTGGCCCAGA CAGTGTTAAC TTTTTTTTTA TTGTGGGTTT TGATTTTTTC 003520 003521 CCCCAGAAAT TGGTTTTATT TGATGTACCC AAGTCTTACG TTTCCCAATA AAGAAAAAAA ATCTCCATAA AA |
Predicted Small Protein
Name | NONHSAT002581_smProtein_356:610 |
Length | 85 |
Molecular weight | 9728.2485 |
Aromaticity | 0.142857142857 |
Instability index | 44.6107142857 |
Isoelectric point | 5.71881103516 |
Runs | 12 |
Runs residual | 0.00887170154686 |
Runs probability | 0.0478714008126 |
Amino acid sequence | MTTEAACSFGWGEEYKETVYTEYVLYSKMWKELYVILWLILESSSGPLCNVLRKRALKFL LPWDVASWTSAANTDVHLLVCCRV |
Secondary structure | LLHHHHLLLLLLLLEEEEEEEEEEEHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHH LLLLHHHHHHHLLLLEEEEEEEEL |
PRMN | - |
PiMo | - |