NONHSAT002581

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT002581

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3592 nt

Genomic location

chr1-:40026488..40030198

Exon number

2

Exons

40026488..40027875,40027995..40030198

Genome context

Sequence
000001 AAGTGCTATA CGCCAGTCTG GGCCTCGTCC AACTCTTCGC CATCTGGCTC CAACTGGTAA TGCTCCGGCC TCTCGTGGCC 000080
000081 TCCCTACTAC CACTCAGAGA GTCGGTGAGC AAACTGGCCT TTAGAAGTGT GGCCTGGGGA GGAGGGAGTC AGGATGACTA 000160
000161 GGCTCTGTCC TGGGTTGGTC AGTTTGTTGG GCTCGAATTT Atcgagtcct ggttctgtaa tcttagctgt gtgcttaggt 000240
000241 ggccacttCA GGAGCAGAGA AACAGTATGA GTTCTAGGTG TGTCAGTTGC TTTTAACATT CTTTGCTCAT CGGTGACCTA 000320
000321 TGTGAAAAAG GTTAGTTGTA GAAGTTTGCT AGCTGGATGA CCACAGAGGC AGCTTGTTCT TTTGGGTGGG GTGAGGAATA 000400
000401 CAAGGAAACA GTGTATACAG AATATGTCTT GTATTCCAAG ATGTGGAAAG AGTTGTATGT TATCCTTTGG CTCATCCTCG 000480
000481 AAAGTAGTAG TGGCCCCCTG TGCAATGTGT TGCGTAAACG TGCTTTGAAA TTTCTCCTTC CGTGGGACGT GGCCAGTTGG 000560
000561 ACATCTGCCG CCAACACTGA TGTGCATTTG CTGGTCTGTT GTAGGGTCTG AGTGCCCGGA CCGCTTGGCT ATGGACTTTG 000640
000641 GTGGGGCTGG TGCCGCCCAG CAAGGGCTGA CTGACAGCTG CCAGTCTGGA GGTGGTATTG GATGCACACA GAAGGGGGAA 000720
000721 AGATGGGATT TGACGGGTCT TTGCCCAGAC TGATGGGCTT TAATTGTATT TGTTCTTTCC CTAAGGCGTT CCCACAGCTG 000800
000801 TGCAGAACTT AGCGCCACGC GCTGCTGTTG CTGCTGCTGC TCCCCGGGCT GTTGCCCCCT ACAAATACGC CTCCAGTGTC 000880
000881 CGCAGCCCTC ATCCTGCCAT ACAGCCTCTG CAGGTGAGGT TCACCAGACA GAATGCTTAA AAGGATTTCC CCCATTTCCA 000960
000961 CTTGATGTAA AAGAAGCTGT GCTTttgatt ccttcaacag gtattaaatg cctgctctgt gttatgacgc tatgttctga 001040
001041 ttcactgtcc ctgcccttca ggggctcact agtgggaaag aAGGGGCTTA AAAGTGCTCT GCCTGATGCC AGTTCACTCA 001120
001121 GAAATGCCTC AGAGCGGGCA GCCAGTGCTT CCTCTTCTGT TTGTACGAAA TAATGTGCTC ATTCAGCTGT TTGAGCCTCC 001200
001201 AGGTCACTTC CGCATCCAAT GACCTATTGG ATCCTTGGCT GCTCTGCAAG ATGATTGGTA CATTAATGCA GGAAATAACT 001280
001281 TCAACTTACA GATCGGATGT TCAGCTTCAA AGATGTAAAG TGTGTGTAGG AGGTGAAGGG GTTGAACCTA GAGCTTAGAT 001360
001361 TTTCTAAGCT GTAACTTGCT GTCTCTAGAC CTGTGCTCTA GATGCAACTA GTTTGTTTCA GAGCCTAATA GCAATTTGCT 001440
001441 GTGGAGGTGT CACCCTAAGC CTTCAGGCCC ATAAGCTGCT TAGGAGATTA CTCTTTAACT GTCCTGTCTC ATACTCTCTA 001520
001521 AGTTGGGGAT TTCCTAGAAC TTGATGCTAT GTAAAATACC TTTTCTTTGC AAGGCTTTGA CTAGCATTGA CGTTGCATGT 001600
001601 TGACCGTTTT TAAGCATTTG ATACAAAAAC ATTTGGTAGA ATTAAGGTGA TGTGGAATGT AATTATAAAT GTGTTGATAT 001680
001681 TTACTCCCTT TGATCCAATC TGCACTGAGA TTTACCCTAA AGGAAAACTA ATTTTCAGGA AAAGGTTATA TACAAGTGTT 001760
001761 TACCCTTATT TATATCAAGG CTTTTCATTC TTGAGTAACT TTGGGTGTAT TAAGGAAATG TCAGAAAATG CTTGCCTAGC 001840
001841 ACTATAGGTT TGTTTTATTA TTTACGTTTC ACTTCGCTTT CTGATAGCAT GCCATTTTCA TTGTAATTGG TTGTGTTTAT 001920
001921 GTCCATACCA CTCTGTTCCT CAACACACCC CTCAATCCTT CAAGGACTGA AATTAGTTCC TTTAGAGCAA GGACAGCCAC 002000
002001 CTCCTCTCCT CTTTCACATA GTCAGATGTT CAGATATTGA ACAGGCACTC AACCACCATC AGGTGTTGTC CTTTCCTCAG 002080
002081 TGCTAACCCA CTGCCTTTCC TGGTTCCCAG GCACCCCAGC CTGCGGTCCA TGTGCAGGGG CAGGAGCCAC TGACTGCCTC 002160
002161 CATGCTGGCT GCAGCACCCC CCCAGGAACA GAAGCAGATG CTGGGAGAAC GCTTGTTCCC ACTCATCCAA ACAATGCATT 002240
002241 CAAATCTGGC TGGGAAGATC ACGGGAATGC TGCTGGAGAT AGACAACTCT GAGCTGCTGC ACATGTTAGA GTCCCCCGAG 002320
002321 TCTCTCCGCT CCAAGGTGAG CTGGGGCTCA GACCCTGCAG CTTCAGTTCT CAGCTTGGGA AGACTGGGGG CAAACTTGGA 002400
002401 TGCCCAGGTG CAGCAGAAAG TGGGATCTGC TGCCCCCAGG ACCCCTCTCG TCATGCCTTG ACTGTGACTG GAGGCTGCAG 002480
002481 TGGGTATTTG GGAAAGTAGT TAGCACCAGA AGCCTAGGGA TCATCTGTAC AGTTGGCTTT GGTCCACCAC TAGGTCTGGG 002560
002561 CACTGGGGAG GGGTGGAGTA GCTCTCCTAG ATTCACTGAC CACCTGAAGA TTTCTCGCAG GTGGATGAAG CTGTAGCAGT 002640
002641 TCTACAGGCT CATCATGCCA AGAAAGAAGC TGCCCAGAAG GTGGGCGCTG TTGCTGCTGC TACCTCTTAG ACAAGGAAAA 002720
002721 ACCGTATGTG TGGCTATTTT CATTTTTGTT CCTATGAGCA TTGTTCCTAT GAGCATTGTC TTTGTGGTTT GACCTGAGGT 002800
002801 TGTATATATG CTCACTGCTT AGCTCTGGGA ATACAATAAG TACAGTTAGT TACACGGAGT GTGTTGCAGG TGACTTCTTA 002880
002881 TCATGAGGAC TGTGGACTTT GTCTGCAGGA GCTTGAGTGA ATAATAAAAC TAGTACTGGT TGATGGTTGT AGGTGTCTCC 002960
002961 AGATAGGGAA AGAAGAGACA GTAAAATAAG CTAAGGAAAA AGCACATGGT AAGGACCAGA GCTGGTGTGT TGGGAGGGTT 003040
003041 GACTTGGCAT AGTCATGACC CTCTTGTCAA GGGCCTCAGG AGCCTtgtca tctagtggta aagaccagag atgctgctaa 003120
003121 atgttgtaca gtacacagga ggacagaccc aacagaatgt ccaaagtgtc aatagcactg aggttgagaa actctCTTCT 003200
003201 AGAATACCTT CCTTTATCCA CTATATGTTA ATGAATCTAA ATTATTTGAT TATGCATTTA TTTGTGTTGG TGCTTTTCTT 003280
003281 TACAGGATTC AAAAGCCAAA TAACCCCTTA TGGAATTCAA CTCAAGGTTT GAAGACTTCC TAGCTTGTCC TATGGACCTC 003360
003361 AACACCAAGG ATTACAAATT GCAAATTTAA TAGGTCATTT TGTATCAAAA GGTCAATTAT GAAGCACCTA GAATTTTTCA 003440
003441 ATTATACGAA TATGTTCTTT GGGTTCTGCT GTGGCCCAGA CAGTGTTAAC TTTTTTTTTA TTGTGGGTTT TGATTTTTTC 003520
003521 CCCCAGAAAT TGGTTTTATT TGATGTACCC AAGTCTTACG TTTCCCAATA AAGAAAAAAA ATCTCCATAA AA
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Predicted Small Protein

Name NONHSAT002581_smProtein_356:610
Length 85
Molecular weight 9728.2485
Aromaticity 0.142857142857
Instability index 44.6107142857
Isoelectric point 5.71881103516
Runs 12
Runs residual 0.00887170154686
Runs probability 0.0478714008126
Amino acid sequence MTTEAACSFGWGEEYKETVYTEYVLYSKMWKELYVILWLILESSSGPLCNVLRKRALKFL
LPWDVASWTSAANTDVHLLVCCRV
Secondary structure LLHHHHLLLLLLLLEEEEEEEEEEEHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHH
LLLLHHHHHHHLLLLEEEEEEEEL
PRMN -
PiMo -