NONHSAT002853
Revision as of 19:24, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002853 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1139 nt |
Genomic location |
chr1+:44501795..44542137 |
Exon number |
7 |
Exons |
44501795..44501843,44511719..44511794,44514030..44514158,44516622..44516830,44516962..44517166,44526804..44526899,44541763..44542137 |
Genome context |
|
Sequence |
000001 CCCACACATA TGTGATAAGC CTCTTACCAT GGGCTGGCCC AGGGAGCAGG ATGAGCTTAT CATGGAACAT AAGAAAAATA 000080
000081 AAACAGATGT CAGCCTGTGT ATGAAGAATT CATCCACAAG ATTTGAGCAG ACCGAAGACT GTGAGACTTC CTCCCCACAG 000160 000161 TGAGCTAAAA GGACGCTTTT GTCAGAGTGG GGAAATAAAA GGGCTTTATG GGAAGGAAGA TAAGAACAGA TGAGTCAGAG 000240 000241 GTTTCTGCTT AATGctcact cttcaattct ttcccgagca aaaccaagaa tcttcttggg ctaagcccca atttggggtt 000320 000321 cacctgcctt gcagcaACAT GGCACCAAAC ATGCGGCAga agagagaaaa cgacagcatg agagacggag aaagaaatgg 000400 000401 ccagttggca aggtggtaat gagagacagc agttggcaag acagtgagag acagcaagag atggtggtac agccaagcag 000480 000481 acaggcaagt aagtggccat actgctactg cctcatgtag gatccggcag gctggtgggt tatcagtcct cacgtgggac 000560 000561 cctcccacca tggcagctga gcacatccaa gctgggggat cctgaagaga ccttcacctg ggtgccacgt ggaagattgg 000640 000641 ccagcaccat tttgactcct gtggatggtt ccaggtaaag acaatccttg cacaaggctt ccaactcgac ccgcctactg 000720 000721 acctggagaa tgaaagtgtc ctgcctcggg gcccctcaga tcagcaccca aactgcacct ggtcacctgt ctacattcag 000800 000801 atttagatga aagccacacc atggaggcag ccagaggccc atgggagatg tctggattcg cagaggaata gctccatgtg 000880 000881 atgcaaacct tgactaatgg gaacaggaaa agggaggaaa ccaggaagat aaatctccct cccttctcat tgctccttgc 000960 000961 aacccttccc acttgaagca tgaccacatt taatgaacaa cctgctgtgt ctcttggaag cttgctgcaa ggcagcaatc 001040 001041 agcacaataa cattgtattg tatcttcctc tgcttcactt ctcttcctcc ctcaccctca ctgccctgag ctggcacatc 001120 001121 ccaaagaaag cattaccac |
Predicted Small Protein
Name | NONHSAT002853_smProtein_251:418 |
Length | 56 |
Molecular weight | 6494.2377 |
Aromaticity | 0.0909090909091 |
Instability index | 58.32 |
Isoelectric point | 7.97906494141 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0486789310319 |
Amino acid sequence | MLTLQFFPEQNQESSWAKPQFGVHLPCSNMAPNMRQKRENDSMRDGERNGQLARW |
Secondary structure | LEEEEELLLLLLLLLLLLLLLEEELLLLLLLLLHHHHLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |