NONHSAT003209

From LncRNAWiki
Revision as of 19:26, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT003209

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1651 nt

Genomic location

chr1+:52058447..52060099

Exon number

1

Exons

52058447..52060099

Genome context

Sequence
000001 ATTTATTGAT AATACCCTTG GGCATTTGAG TTTACTCCCC CATTGGACAA GTGGAGTTCA GTCCTTGAGG GAATGATGGC 000080
000081 AGGTCTGTGC ATGTTCTCCC TGCCTTCTAC TGGGAGGGAT TATGGTGTGA GTAAAAGCCA GCTGGGGCAG GGAAATGGGC 000160
000161 CCTCAAGCTA GCAGTCACAA GATTAGCCTC AAAGGGCTCA TTACAAAGGA TGGCTGAAAT CCATCAGGAA GTAGGGGACC 000240
000241 TTGAACCTAT CCTTGGAAAA GGATTGTGCT TTGTTACAGT GAAGCTGAGG GGCTTTTTGC ATCCCACTTT TCAGCCAACT 000320
000321 CCTGAACATT TTTCCTGTCT GCCCCCTCCC CTGTATTCCT ATCACTACTA CTCTGGTACA GCCTCTCTAC TTTTCACCAT 000400
000401 GAAGAGGGGG AAAATGAGAG AGAGAGGGAG AGAGAAATAA ATGGAAATAA ATAAATAGTG GGGAAAAAAG ATTACAATAG 000480
000481 CCTCCTGGAT GGTTTTTCTG TCTCCAAACT CAACTTCAGT CAGCCTCACA ATCCAGGTCC ACTTACTTTC TGAAGCACTC 000560
000561 TTTCTAATAC CCAGGTCAGA TCTTATTTCT CCCCACTTAT CACCTTCACT AGTTTCCCAC TGCCTTCAGC AAAAGGTCAG 000640
000641 GCTCCCTAAC CCCCTTGGTA TATGCCCCAC CTGCTCTCCA GCCTCACCCT AACTCCCCTC CCCTTCACAC TTTCCTGTTC 000720
000721 CCTGAAGATG CCACTGCTGG CTGTATCATT GTACATGCTG TTCTTCTTAC CTGGAATACC CTTCTCCCCT TCTCTGCCCA 000800
000801 TCTGATAAAC TGACTTATCC TTCGAAACAT TGCTTAAGTT TCGCCTTCTC CCTGAAGCTT TCCTGTCCAG GCCTTTTGCC 000880
000881 TGGGCTTATT CCCACCTTCC TCTGTAGCAC CTCTATACCT TGCTACCCTC AAAACAGTAT TACTTGTATC ACCAGTATCT 000960
000961 GTACCATTGA ACATTTGTCT TTAGGTAAGT AAGATTGGGA ATTTGAGTCT CAGAAATGGG AAAAGGCTTA TCCAGGGATC 001040
001041 CATGGTGGAA TGTGGACTCA AATCCAAAAC ATCCCAGTTC CCCAGCAAGT GCCCTATCTA CTGCACCCTC AAATAATTAA 001120
001121 TCAGATTTCA CACACACACA CACACACACA CACACACACA CACACACGAA GAGCATCATT TGTTAGTGGG CTGAAACAGT 001200
001201 ACTATTGAAC ATTTGTCCTT AGGTAAGTAA GCCCTTCCAT AATTCTCTGA AGTTCATGAG GCATTCTAGG GAAGAGACTG 001280
001281 GACAAGATGA CCCCCAAGAT CCTCTGAACT CTGATATTTT ATGAAACACA GAAAATTTGG CTAGGCGCAG TGGCTCACGC 001360
001361 CTGTAACCCC AGCACTTTGG GAGGCCGAGG TGTGTGGATC ACCTGAGGTC AGGAGTTCGA GACAAACCTG ACCAGCATGG 001440
001441 TGAAACCCTG TCTCTACTAA AAATAAAAAA TAAATAAATA AATAAATAGC CGGGCGTGGT GGCGGGCACC AGCTACTCAG 001520
001521 GAGGCTGAGG CAGGATAATC ACTTGAACCT GGGAGGCAGA GGTTGCAGTG AGCCGAGATC ATGCCATTGC ACTCCAGCCT 001600
001601 AGGTGACGGA GTGAGACTCC ATCTCAAAAA AAATAAAAAA GAAAGAAACA G
[back to top]

Predicted Small Protein

Name NONHSAT003209_smProtein_209:439
Length 77
Molecular weight 8740.1045
Aromaticity 0.118421052632
Instability index 48.9881578947
Isoelectric point 9.06341552734
Runs 13
Runs residual 0.0296430732002
Runs probability 0.0383732148438
Amino acid sequence MAEIHQEVGDLEPILGKGLCFVTVKLRGFLHPTFQPTPEHFSCLPPPLYSYHYYSGTASL
LFTMKRGKMRERGREK
Secondary structure LHHHHHHHLLLLLLLLLLEEEEEEEELEEELLLLLLLLLLLLLLLLLLEEEEEELLEEEL
LEEEELLLLLLLLLLL
PRMN -
PiMo -