NONHSAT003209
Revision as of 19:26, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT003209 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1651 nt |
Genomic location |
chr1+:52058447..52060099 |
Exon number |
1 |
Exons |
52058447..52060099 |
Genome context |
|
Sequence |
000001 ATTTATTGAT AATACCCTTG GGCATTTGAG TTTACTCCCC CATTGGACAA GTGGAGTTCA GTCCTTGAGG GAATGATGGC 000080
000081 AGGTCTGTGC ATGTTCTCCC TGCCTTCTAC TGGGAGGGAT TATGGTGTGA GTAAAAGCCA GCTGGGGCAG GGAAATGGGC 000160 000161 CCTCAAGCTA GCAGTCACAA GATTAGCCTC AAAGGGCTCA TTACAAAGGA TGGCTGAAAT CCATCAGGAA GTAGGGGACC 000240 000241 TTGAACCTAT CCTTGGAAAA GGATTGTGCT TTGTTACAGT GAAGCTGAGG GGCTTTTTGC ATCCCACTTT TCAGCCAACT 000320 000321 CCTGAACATT TTTCCTGTCT GCCCCCTCCC CTGTATTCCT ATCACTACTA CTCTGGTACA GCCTCTCTAC TTTTCACCAT 000400 000401 GAAGAGGGGG AAAATGAGAG AGAGAGGGAG AGAGAAATAA ATGGAAATAA ATAAATAGTG GGGAAAAAAG ATTACAATAG 000480 000481 CCTCCTGGAT GGTTTTTCTG TCTCCAAACT CAACTTCAGT CAGCCTCACA ATCCAGGTCC ACTTACTTTC TGAAGCACTC 000560 000561 TTTCTAATAC CCAGGTCAGA TCTTATTTCT CCCCACTTAT CACCTTCACT AGTTTCCCAC TGCCTTCAGC AAAAGGTCAG 000640 000641 GCTCCCTAAC CCCCTTGGTA TATGCCCCAC CTGCTCTCCA GCCTCACCCT AACTCCCCTC CCCTTCACAC TTTCCTGTTC 000720 000721 CCTGAAGATG CCACTGCTGG CTGTATCATT GTACATGCTG TTCTTCTTAC CTGGAATACC CTTCTCCCCT TCTCTGCCCA 000800 000801 TCTGATAAAC TGACTTATCC TTCGAAACAT TGCTTAAGTT TCGCCTTCTC CCTGAAGCTT TCCTGTCCAG GCCTTTTGCC 000880 000881 TGGGCTTATT CCCACCTTCC TCTGTAGCAC CTCTATACCT TGCTACCCTC AAAACAGTAT TACTTGTATC ACCAGTATCT 000960 000961 GTACCATTGA ACATTTGTCT TTAGGTAAGT AAGATTGGGA ATTTGAGTCT CAGAAATGGG AAAAGGCTTA TCCAGGGATC 001040 001041 CATGGTGGAA TGTGGACTCA AATCCAAAAC ATCCCAGTTC CCCAGCAAGT GCCCTATCTA CTGCACCCTC AAATAATTAA 001120 001121 TCAGATTTCA CACACACACA CACACACACA CACACACACA CACACACGAA GAGCATCATT TGTTAGTGGG CTGAAACAGT 001200 001201 ACTATTGAAC ATTTGTCCTT AGGTAAGTAA GCCCTTCCAT AATTCTCTGA AGTTCATGAG GCATTCTAGG GAAGAGACTG 001280 001281 GACAAGATGA CCCCCAAGAT CCTCTGAACT CTGATATTTT ATGAAACACA GAAAATTTGG CTAGGCGCAG TGGCTCACGC 001360 001361 CTGTAACCCC AGCACTTTGG GAGGCCGAGG TGTGTGGATC ACCTGAGGTC AGGAGTTCGA GACAAACCTG ACCAGCATGG 001440 001441 TGAAACCCTG TCTCTACTAA AAATAAAAAA TAAATAAATA AATAAATAGC CGGGCGTGGT GGCGGGCACC AGCTACTCAG 001520 001521 GAGGCTGAGG CAGGATAATC ACTTGAACCT GGGAGGCAGA GGTTGCAGTG AGCCGAGATC ATGCCATTGC ACTCCAGCCT 001600 001601 AGGTGACGGA GTGAGACTCC ATCTCAAAAA AAATAAAAAA GAAAGAAACA G |
Predicted Small Protein
Name | NONHSAT003209_smProtein_209:439 |
Length | 77 |
Molecular weight | 8740.1045 |
Aromaticity | 0.118421052632 |
Instability index | 48.9881578947 |
Isoelectric point | 9.06341552734 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0383732148438 |
Amino acid sequence | MAEIHQEVGDLEPILGKGLCFVTVKLRGFLHPTFQPTPEHFSCLPPPLYSYHYYSGTASL LFTMKRGKMRERGREK |
Secondary structure | LHHHHHHHLLLLLLLLLLEEEEEEEELEEELLLLLLLLLLLLLLLLLLEEEEEELLEEEL LEEEELLLLLLLLLLL |
PRMN | - |
PiMo | - |