NONHSAT003252
Revision as of 19:26, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT003252 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1992 nt |
Genomic location |
chr1+:53099066..53135355 |
Exon number |
6 |
Exons |
53099066..53099347,53105647..53105739,53108535..53108674,53125073..53125252,53133071..53133251,53134240..53135355 |
Genome context |
|
Sequence |
000001 CTCAGGCTCA GCTCCGTCTC GCTCGGTCCC TCGCTTCCCC GCCGGGCTCT AGCCGGCCGT CTGGTGGCCC GAGGTGGCGG 000080
000081 CGGGCTGGGC GCGGGGCGCG ATGAGCGGCG CCTGCACGAG CTACGTGAGC GCAGAGCAGG AGGTGGTGCG CGGCTTCAGC 000160 000161 Tgcccgcggc cggggggcga ggcggccgcT GTCTTCTGCT GCGGCTTCCG CGACCACAAG TACTGCTGCG ACGACCCGCA 000240 000241 CAGCTTCTTC CCCTACGAGC ACAGCTACAT GTGGTGGCTC AGaaatgggg tttcaccatg ttgcccaggc tggtcttgaa 000320 000321 ttcctggact caagtgatcg gcccaccttg tcatcccaaa gtgctgagat tacagCATTG GCGCTCTCAT AGGCCTGTCC 000400 000401 GTAGCAGCAG TGGTTCTTCT CGCCTTCATT GTTACCGCCT GTGTGCTCTG CTACCTGTTC ATCAGCTCTA AGCCCCACAC 000480 000481 AAAGTTGGAC CTGGGCTTGA GCTTACAGAC AGCAGgacct gtgcaggttg ccacaaacaa gaggaatcag acagttctca 000560 000561 ccctcaaggg gctcacatgg aggacaaggc aggcacacaa atggccagga ggcccagtgg tggcccttca tggggcttta 000640 000641 gggaggaaga aatgatgtct gagctgaatc atcaaagatg actcaaagtt tccagGTGGT TCCTAACTTC CTGGCAACAA 000720 000721 CCACAATTGT AATTCGTTCA AAGAGATTGA CTGCTGTGGA GACAGATcat caccatcacc atcaccatca ccatcaccac 000800 000801 caccaccatc atcatcattg tcatcgtcat caTTATGTTG CTTttagctc actggagcct cacagaaccc tgtgagggca 000880 000881 tggacagatc ttcctcaGAG GAGGCCTCAG CAAGTGTCAG CCACACGAAT GAGTGTATGG AGCAAAGGAG GAGTGAACGT 000960 000961 CTAGGAGACC AGCCGTTACC CCAACTCCTC CCCATCCGCT CCTACTCTGG ACTCCAATCT ATGCCCTACC CCAGCTCTTG 001040 001041 GATTTGGCCT TTGGATCAGG TTCTTCTGGT AATGAAGCCT CACCTTTCCC CCAACTAACT CTGATCTGGC CTACCCTGCT 001120 001121 CCTGACTAAC CTCAAGGATC CTGAGTCTCC TTCAGCCTAA CAGCTCCAGA AGCTGAACTC CAGCCCTAAG AGCCCCAGCT 001200 001201 GCAGACAGGC CTCTGGCCAA GAGCTTAGTC AGGCTACCCT GACTAAGCCA CAGGGTTGGC ATGCCCTCTG GGCAGCCCCT 001280 001281 GAACCGGGCT CTGAAAACAC AGGAATGGAC AAGGTAATCT ACCCGAGTCC TGAGCCTGCA AGGTAGTTGA GACAGATCTT 001360 001361 GAAGGAGAGT GGGCACAGTC AGAAAGGAAA AAGTGGCTCA GTGTAAAATA AAACTGACAC AAGCCCATGT ACCAGCAGCC 001440 001441 AATTGGATCt tttttttttt tttttttttg agatggggct tctcttattg cccaggctgg tcttgaactt ctgagctcaa 001520 001521 gcgatcctcc caccttggcc taccaaagtg ctgggattac aggcgtgaac caccAATTGG ATCTTTACTG GACCCCTACA 001600 001601 GGGCACTGAG CTAGGGAATG TTGGAGATTC AGAGGCTGAA TCAGATAGCA GCCCAACCCT GAGATACAAC TGAGCTACAG 001680 001681 GCAAGAGGAT ACTAccgggc gcagtggctc acacctgtaa tcccagcact ttgggaggcc gaggcgggtg gatcatgtga 001760 001761 ggccaggagt tcgagaatac cctggccaac atggtgaaac cccatctcta ttaaaaatac aaaaattagc tggggttggt 001840 001841 ggcacatgcc tgtaaaccta gctacttgag aggctgagac acgagaatca cttgaacctg ggaggtggag gttgcagtga 001920 001921 gctgtgatca cgccactgca ccccagcctg ggtgacagag cgagactctg tctcaaaaaa aaaaaaaaaa aa |
Predicted Small Protein
Name | NONHSAT003252_smProtein_677:874 |
Length | 66 |
Molecular weight | 7871.6668 |
Aromaticity | 0.0615384615385 |
Instability index | 45.6276923077 |
Isoelectric point | 9.30682373047 |
Runs | 11 |
Runs residual | 0.0189423076923 |
Runs probability | 0.048867048867 |
Amino acid sequence | MTQSFQVVPNFLATTTIVIRSKRLTAVETDHHHHHHHHHHHHHHHHHCHRHHYVAFSSLE PHRTL |
Secondary structure | LLLLEEEELLLLEEEEEEEELLEEEEEELLLLLLHHHLLLLLLLLLLLLLLEEEEELLLL LLLLL |
PRMN | - |
PiMo | - |