NONHSAT003825

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT003825

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1280 nt

Genomic location

chr1+:68962359..69004310

Exon number

3

Exons

68962359..68962454,68995008..68995162,69003315..69004310

Genome context

Sequence
000001 GGGGAGGCAC AGGAGTCGCT CCTCATAGCG AGTCTGGTGC GGCCTACGCG CGGCGCTTCC TTTCGGACCT GAGGCCCAGA 000080
000081 CCCTCAAAAT AGAGGGAGCG GATAAGGAAG TCATAATATT AATGAACTCT GAGGACTGCT ATGAGGATAA AATGGGATCA 000160
000161 TCATCATCAT CATCATCACT TACTCAATGC GTACTACAAT CCTGGCACTC CTCTAAGTGT TACAAATATA TTAACTCCAA 000240
000241 CAATAACTCC AGAAGAAATC CTAGTATTGC ATAAGTGATC TTCATGAAGC TTCCTATTCC CTGTGGAGTT TGGAAGGAGA 000320
000321 GGCATTCCTG TAGGCTTCTG CTGAGAAGGG AAGAAGAGTC TTCCTGCTTG GACACTGGGC TTCTGAAAAG GCCATGTGCT 000400
000401 CTCCTATCTC ACAGTTTTCT TTCTTTTACT TTTTTTGTTT GTCTTTTTTC TCTTTTTTTA TTCTTTTTTT CTTACCTCAC 000480
000481 AGTCTTGTAT GTGTTTTGAC TGTCACAAGA ATGAGCATTG GATGTGGTAG AAAAAATTCT TGGATTAGTG CCTCTCATTA 000560
000561 GTCCCTAAAA ATACATATGT ATCTGGCCCC AACTCCTGGT GACTCTCTAA GCTTATGATG CATTTTTTGG TATGTTTTGT 000640
000641 ATACAGTTTT GAGCTTCCGC AATGATTTTT AAAACAGGAC AAAATCCCAT ATGAACATTC TGTTATACTC CATTAAATTG 000720
000721 TCAATACCAG AGATACAGGA AAATTATTTT CTCATTCTAA CTTTATATAC CCAATATCTA ACAAAGCAGC TGCAAAATGG 000800
000801 TTGCTACTCA ATAAATATTT GTTGAATGAA TGAAGGAATG AAAAGCCAAA TGTAATACAT AGAAAAGTTG ATTATAAATT 000880
000881 CTTTGGTACA AAATAGACAG ACAAAACATA ATCTAGGAAA TATGCACCCT GAGAAATTGC TATCATCATC TTAATACCTT 000960
000961 ATAACAACGA AAGTTCTTAA ACTGGTCCCC TTAATACCAT TGTGTTTATT TTCTGTATGT TTATACTTTT ATGCTTTGGT 001040
001041 TTCATTTTCT ACTTATTAGT TAAATGATTA TGAGAACTGT GGGGATAAAT TTAAAACATT ACTGTGTTTC TATAGAGAGT 001120
001121 TCTGCTGTAA TGCAGTGATT ATGAAATGAT CTCAAATCTA TTCAGAATTA TTAAAAGGTA CAGTTCAATA AATATTTTTA 001200
001201 TTTTTGTTAA TTCTTCCCCA AATCACATTA AAACGATCCT TTTGCACTTA AAAAAAAAAA AAAAAAAAAA AAGAAAAAAA 001280
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Predicted Small Protein

Name NONHSAT003825_smProtein_140:277
Length 46
Molecular weight 5326.0603
Aromaticity 0.0666666666667
Instability index 40.1777777778
Isoelectric point 7.10406494141
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0235934463876
Amino acid sequence MRIKWDHHHHHHHLLNAYYNPGTPLSVTNILTPTITPEEILVLHK
Secondary structure LEEEELLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHEEELL
PRMN -
PiMo -