NONHSAT004060
Revision as of 19:30, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004060 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1866 nt |
Genomic location |
chr1-:78410602..78413354 |
Exon number |
2 |
Exons |
78410602..78411327,78412215..78413354 |
Genome context |
|
Sequence |
000001 AGTTCTGATA TTTTGTTGAA ATCCATTGTT TTACTCTTTG CATATTTGTT GGCTCTTTGC ATATTAATAT ATTAGACTAC 000080
000081 ATGCAAATAC AGTCTGTCTT GCCATTGTCT GTTGAAGTGC AGGTTTGATC CAGCCAGTAT AGAACTAGCT CTGTAGGGGT 000160 000161 GAGGAGGACT GTGCTGTGTA TCATCCTTGA TTGTGTTCCT TCAAGGAGCA TTGCACTGTA AGTACATCAG AATGACAAAT 000240 000241 TGATGAACTG CAACAGTATC TTTTTGTCAA TGTTCCACAT AATGCAAATG CCATACGTTG TGTGAATATT ATGTTGGAAT 000320 000321 ACAGTGCTGA TATCTTGGAA AACCATAACT GCCTCTTAAT TTAACATAGA ATAATACATA GTTCTGTATT TTTTTTAAAG 000400 000401 TGAGCTTAAT GGGTAAGTAT TTTTTATATG CTTTAGCTAT AGCTAAAGAA AACTGATACT TAACAAAGTT GAATAGTATT 000480 000481 ATTCACTGGT GCTCCTAAAA TATTGTTTTT CAGTGTAAAA TATGCATATC TTCTATATTT AATATGAAAG TCTTGAAATG 000560 000561 TATCAGACAG AAGGGGATTT CAGTTTGCAA ATAATGAGCA ATGTAGCAAT TTTAACACAT TTCATAAATA TATATTTTGT 000640 000641 CATTGGTGGA GAGCACCATT TGTTGTTTTG AATATACTTT AAAGGAAGAG GTACAAGGAC ATAAATGTTG AGATTACCTA 000720 000721 CAGGATGGAA ATAGCAGTAC AGTTCATTGT AGATATTTTG AAATGTTTTT GATTGTTTTA TATAACCTAG AGTGACTTCC 000800 000801 CTTACCCTTA TTTAGATCTG CATATATAGT TCTAGTATGA AGTTTAATAG TTAAGGAGTT AGCTATTTGT TATCTTTAAG 000880 000881 AGTAGGGTAT TGACGTGAAC AATTGCAGTA TTTTGCATGA TACTGTTTTA TAGATGACCT TTTAGGAAAG TGGTGCATTT 000960 000961 ATTAATTGAA CTGAAGAAGT AGTTCAGTTG AATTCAGTAT CATAATTCAC AAATTGGAGG CTGTTGATTT TGATTCATTT 001040 001041 AAGGTTTAAA ATCTTTATTA ATTGCAAACA GTGCAATTAT TTATACTTCA CAGTGCCTTC CCAGACCTTC CACCTTAGGT 001120 001121 TCTGCTGCAA AAAGCACCAG TGCTGAAGAT GCTGCAAGCA CCAAATCATA GCTCATAAAA TCAGGTCCTG AGATAGTTAC 001200 001201 CCATAAAGAG GAATCCTTTG AGTGTATGCC ATTGGTGAGC CGATGAGCAT GGACCATAGA AGGGCTCAAT GTAGAAGGTA 001280 001281 AAATTGGCAA ATCATAATTG AGAAATATGA AATGTATTCC CATACATAAT ATGGTATAGG GTGTAATGTA CCTGCTTTTG 001360 001361 ATCACTTTTC ATTTTAAAGT GCTATTCACT TGATCTTAAA TGTTCCATGA ACTGTTAAAT TTCTTAAGTT ACATAGTTAC 001440 001441 TACACCACAT TTATGTGTAT GTTATGTTTT AATAGTCAAT GATAGGTATG TACAATTGAT AATATAAAGG GGCTCATTGA 001520 001521 AACTTGAGAG CCTGTTGAGT TTTGGTTAGT TGTAGATTGC ATTTTTATAA AAAAAAATAC AGATAGATTG ATGATAATAG 001600 001601 ATATTGGGGC ATTGTTTCTG TCTCATGAGA ATTCTTTTAT TCATTACCAT AAGCCTTCAC TGATACTATA AGCATTATTT 001680 001681 TAAATGACGC TGATCTTAAG TCTGAAATAA ATGGAAAGCA GAAAAGGTGA GCCAGTTGAT TTGAATGCAT TGGATATTAG 001760 001761 TGTTAGAAAC AATGTATAGT TTAGATTGAA ACTGAACTGA CTTATTTAGC ACTTAAACAA AAATTTGACA ATGTTTTTAG 001840 001841 TTTTTTTTAA GACAGCTTAG TGTGGT |
Predicted Small Protein
Name | NONHSAT004060_smProtein_557:670 |
Length | 38 |
Molecular weight | 4299.9204 |
Aromaticity | 0.162162162162 |
Instability index | 53.5216216216 |
Isoelectric point | 5.16827392578 |
Runs | 6 |
Runs residual | 0.017604760724 |
Runs probability | 0.0323558852971 |
Amino acid sequence | MYQTEGDFSLQIMSNVAILTHFINIYFVIGGEHHLLF |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHHEEEEELLLEEELL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTiiiiii |