NONHSAT004060

From LncRNAWiki
Revision as of 19:30, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT004060

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1866 nt

Genomic location

chr1-:78410602..78413354

Exon number

2

Exons

78410602..78411327,78412215..78413354

Genome context

Sequence
000001 AGTTCTGATA TTTTGTTGAA ATCCATTGTT TTACTCTTTG CATATTTGTT GGCTCTTTGC ATATTAATAT ATTAGACTAC 000080
000081 ATGCAAATAC AGTCTGTCTT GCCATTGTCT GTTGAAGTGC AGGTTTGATC CAGCCAGTAT AGAACTAGCT CTGTAGGGGT 000160
000161 GAGGAGGACT GTGCTGTGTA TCATCCTTGA TTGTGTTCCT TCAAGGAGCA TTGCACTGTA AGTACATCAG AATGACAAAT 000240
000241 TGATGAACTG CAACAGTATC TTTTTGTCAA TGTTCCACAT AATGCAAATG CCATACGTTG TGTGAATATT ATGTTGGAAT 000320
000321 ACAGTGCTGA TATCTTGGAA AACCATAACT GCCTCTTAAT TTAACATAGA ATAATACATA GTTCTGTATT TTTTTTAAAG 000400
000401 TGAGCTTAAT GGGTAAGTAT TTTTTATATG CTTTAGCTAT AGCTAAAGAA AACTGATACT TAACAAAGTT GAATAGTATT 000480
000481 ATTCACTGGT GCTCCTAAAA TATTGTTTTT CAGTGTAAAA TATGCATATC TTCTATATTT AATATGAAAG TCTTGAAATG 000560
000561 TATCAGACAG AAGGGGATTT CAGTTTGCAA ATAATGAGCA ATGTAGCAAT TTTAACACAT TTCATAAATA TATATTTTGT 000640
000641 CATTGGTGGA GAGCACCATT TGTTGTTTTG AATATACTTT AAAGGAAGAG GTACAAGGAC ATAAATGTTG AGATTACCTA 000720
000721 CAGGATGGAA ATAGCAGTAC AGTTCATTGT AGATATTTTG AAATGTTTTT GATTGTTTTA TATAACCTAG AGTGACTTCC 000800
000801 CTTACCCTTA TTTAGATCTG CATATATAGT TCTAGTATGA AGTTTAATAG TTAAGGAGTT AGCTATTTGT TATCTTTAAG 000880
000881 AGTAGGGTAT TGACGTGAAC AATTGCAGTA TTTTGCATGA TACTGTTTTA TAGATGACCT TTTAGGAAAG TGGTGCATTT 000960
000961 ATTAATTGAA CTGAAGAAGT AGTTCAGTTG AATTCAGTAT CATAATTCAC AAATTGGAGG CTGTTGATTT TGATTCATTT 001040
001041 AAGGTTTAAA ATCTTTATTA ATTGCAAACA GTGCAATTAT TTATACTTCA CAGTGCCTTC CCAGACCTTC CACCTTAGGT 001120
001121 TCTGCTGCAA AAAGCACCAG TGCTGAAGAT GCTGCAAGCA CCAAATCATA GCTCATAAAA TCAGGTCCTG AGATAGTTAC 001200
001201 CCATAAAGAG GAATCCTTTG AGTGTATGCC ATTGGTGAGC CGATGAGCAT GGACCATAGA AGGGCTCAAT GTAGAAGGTA 001280
001281 AAATTGGCAA ATCATAATTG AGAAATATGA AATGTATTCC CATACATAAT ATGGTATAGG GTGTAATGTA CCTGCTTTTG 001360
001361 ATCACTTTTC ATTTTAAAGT GCTATTCACT TGATCTTAAA TGTTCCATGA ACTGTTAAAT TTCTTAAGTT ACATAGTTAC 001440
001441 TACACCACAT TTATGTGTAT GTTATGTTTT AATAGTCAAT GATAGGTATG TACAATTGAT AATATAAAGG GGCTCATTGA 001520
001521 AACTTGAGAG CCTGTTGAGT TTTGGTTAGT TGTAGATTGC ATTTTTATAA AAAAAAATAC AGATAGATTG ATGATAATAG 001600
001601 ATATTGGGGC ATTGTTTCTG TCTCATGAGA ATTCTTTTAT TCATTACCAT AAGCCTTCAC TGATACTATA AGCATTATTT 001680
001681 TAAATGACGC TGATCTTAAG TCTGAAATAA ATGGAAAGCA GAAAAGGTGA GCCAGTTGAT TTGAATGCAT TGGATATTAG 001760
001761 TGTTAGAAAC AATGTATAGT TTAGATTGAA ACTGAACTGA CTTATTTAGC ACTTAAACAA AAATTTGACA ATGTTTTTAG 001840
001841 TTTTTTTTAA GACAGCTTAG TGTGGT
[back to top]

Predicted Small Protein

Name NONHSAT004060_smProtein_557:670
Length 38
Molecular weight 4299.9204
Aromaticity 0.162162162162
Instability index 53.5216216216
Isoelectric point 5.16827392578
Runs 6
Runs residual 0.017604760724
Runs probability 0.0323558852971
Amino acid sequence MYQTEGDFSLQIMSNVAILTHFINIYFVIGGEHHLLF
Secondary structure LLLLLLLLHHHHHHHHHHHHHHHHEEEEELLLEEELL
PRMN LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
PiMo oooooooooooooTTTTTTTTTTTTTTTTTTiiiiii