NONHSAT004072
Revision as of 19:30, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004072 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1189 nt |
Genomic location |
chr1+:78695283..78835147 |
Exon number |
6 |
Exons |
78695283..78695413,78715868..78716057,78717178..78717561,78808210..78808324,78834222..78834412,78834968..78835147 |
Genome context |
|
Sequence |
000001 ATTGCTGATT TGGTAACCAC CTCAGAGCCT ACCCTATTTA TTCCCAGCAT GGACCTAAAT CCACTTCAGC CAAAAATGAA 000080
000081 CAAAGAAATG ATGAAGAACA GAGCCTGTTT CTTTCTCAGT GGTGTACTCA GAAAATGGAT GCAAGAGTAG AAGCTGATCC 000160 000161 TCGAGGCTTG CAAAAGTGGG GTTCTTTCTG AAAGTGAAGC CAGCAGCCAA GAGCCACCCT TCAGAAGATA GAAGGAAGAG 000240 000241 CAGCTGCATG AGTGATGGCC ACAGCAATGC ATGGGTCCTG TCTGTCCACG TAGTCCTCTC CATCTGCCCG TAGCTTGCCA 000320 000321 GGAAACTTTC TATAATAATA CCAATACAAC CAAAGACTAT TATTCTGAAC AGAAAACAAG AAATACAGCT GGAGCTATTT 000400 000401 CCTATCTACC TGATGAAGGG CACTACCAGG CGGTCACTCT GGCTCTGTCC ACCGATGCCT GTGCCCACTT TGTGCGACGT 000480 000481 AGCTTCCATG GAGACAAGAG CAATGGTAAT GGAAGAAGAA AGTCTGGATG TACTCTTGCA GAAGCAGAAA GCTTCATGGA 000560 000561 ACAATATTAA TCTTCTGGTC ATCTCTGTGC TGGTCTAGTT GCCCATAAAG TTGTCAGATT GACTTTGGAT TTAAAGCCTG 000640 000641 AAAATGAGTC CCAAGGAAAT CCGTTGACAT GAGGCCCAAG GAAGACAGTT TTTGGAAGGG GCAAGCATAA TGATTTGGAA 000720 000721 TGATGCCTAA TAAAATAAAT GGTTGACCAG AAGATTAATA ATGTGTTGGT TTCTCAATAG AAGAGGAGGA AAACATGTTT 000800 000801 TTAAGATTCT TACCAATAAG GCTCACTCCA CCCAGTCCTG TGACTCATGA CTCACCTCCA ATCAAGAGAT GGACTCAGCT 000880 000881 CATGAGGACC ATTTTCCATA CCCCTATGAC TGCCTCCGCA ACCAACCAGC AACACCCATC ACCTAGTCAC CTGCCCACCA 000960 000961 TACTATCCTT GAAAATCTCT AATCTTCAAG CCTTCAGGGA GACTGATTTG AAACAAAAGG GACCCTAGAA ATCTTCAGCC 001040 001041 ATCCAAAAGA AGGCAAAAAA AAGAGTATCA AGGAAAGAGG ATGGCAAACA GAAAATGTAA AAGAAGATGG TAGAAATCAC 001120 001121 TTCAAGTTGG TAATCACAAT ATATGTAAAT ATATTAAACA CATCCATTAA AAGGCTATGT GATTAGATT |
Predicted Small Protein
Name | NONHSAT004072_smProtein_794:1027 |
Length | 78 |
Molecular weight | 8798.1891 |
Aromaticity | 0.0649350649351 |
Instability index | 59.8181818182 |
Isoelectric point | 11.4664916992 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0403317756259 |
Amino acid sequence | MFLRFLPIRLTPPSPVTHDSPPIKRWTQLMRTIFHTPMTASATNQQHPSPSHLPTILSLK ISNLQAFRETDLKQKGP |
Secondary structure | LEEEEELEELLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEEE LLLLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |