NONHSAT004072

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004072

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1189 nt

Genomic location

chr1+:78695283..78835147

Exon number

6

Exons

78695283..78695413,78715868..78716057,78717178..78717561,78808210..78808324,78834222..78834412,78834968..78835147

Genome context

Sequence
000001 ATTGCTGATT TGGTAACCAC CTCAGAGCCT ACCCTATTTA TTCCCAGCAT GGACCTAAAT CCACTTCAGC CAAAAATGAA 000080
000081 CAAAGAAATG ATGAAGAACA GAGCCTGTTT CTTTCTCAGT GGTGTACTCA GAAAATGGAT GCAAGAGTAG AAGCTGATCC 000160
000161 TCGAGGCTTG CAAAAGTGGG GTTCTTTCTG AAAGTGAAGC CAGCAGCCAA GAGCCACCCT TCAGAAGATA GAAGGAAGAG 000240
000241 CAGCTGCATG AGTGATGGCC ACAGCAATGC ATGGGTCCTG TCTGTCCACG TAGTCCTCTC CATCTGCCCG TAGCTTGCCA 000320
000321 GGAAACTTTC TATAATAATA CCAATACAAC CAAAGACTAT TATTCTGAAC AGAAAACAAG AAATACAGCT GGAGCTATTT 000400
000401 CCTATCTACC TGATGAAGGG CACTACCAGG CGGTCACTCT GGCTCTGTCC ACCGATGCCT GTGCCCACTT TGTGCGACGT 000480
000481 AGCTTCCATG GAGACAAGAG CAATGGTAAT GGAAGAAGAA AGTCTGGATG TACTCTTGCA GAAGCAGAAA GCTTCATGGA 000560
000561 ACAATATTAA TCTTCTGGTC ATCTCTGTGC TGGTCTAGTT GCCCATAAAG TTGTCAGATT GACTTTGGAT TTAAAGCCTG 000640
000641 AAAATGAGTC CCAAGGAAAT CCGTTGACAT GAGGCCCAAG GAAGACAGTT TTTGGAAGGG GCAAGCATAA TGATTTGGAA 000720
000721 TGATGCCTAA TAAAATAAAT GGTTGACCAG AAGATTAATA ATGTGTTGGT TTCTCAATAG AAGAGGAGGA AAACATGTTT 000800
000801 TTAAGATTCT TACCAATAAG GCTCACTCCA CCCAGTCCTG TGACTCATGA CTCACCTCCA ATCAAGAGAT GGACTCAGCT 000880
000881 CATGAGGACC ATTTTCCATA CCCCTATGAC TGCCTCCGCA ACCAACCAGC AACACCCATC ACCTAGTCAC CTGCCCACCA 000960
000961 TACTATCCTT GAAAATCTCT AATCTTCAAG CCTTCAGGGA GACTGATTTG AAACAAAAGG GACCCTAGAA ATCTTCAGCC 001040
001041 ATCCAAAAGA AGGCAAAAAA AAGAGTATCA AGGAAAGAGG ATGGCAAACA GAAAATGTAA AAGAAGATGG TAGAAATCAC 001120
001121 TTCAAGTTGG TAATCACAAT ATATGTAAAT ATATTAAACA CATCCATTAA AAGGCTATGT GATTAGATT
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Predicted Small Protein

Name NONHSAT004072_smProtein_794:1027
Length 78
Molecular weight 8798.1891
Aromaticity 0.0649350649351
Instability index 59.8181818182
Isoelectric point 11.4664916992
Runs 11
Runs residual 0.00677583286279
Runs probability 0.0403317756259
Amino acid sequence MFLRFLPIRLTPPSPVTHDSPPIKRWTQLMRTIFHTPMTASATNQQHPSPSHLPTILSLK
ISNLQAFRETDLKQKGP
Secondary structure LEEEEELEELLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLEEE
LLLLHHHHHHHHHLLLL
PRMN -
PiMo -