NONHSAT004288
Revision as of 19:31, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3344 nt |
Genomic location |
chr1+:87597609..87602352 |
Exon number |
4 |
Exons |
87597609..87597942,87598347..87598546,87599297..87599401,87599648..87602352 |
Genome context |
|
Sequence |
000001 GGAACATCCT CGCGGCCCGA GGCGCGGTCG CAGCCGGGGA GCACTCGCCA CGGTGCTGTG GAATTCTCTG GTTTTTCACG 000080
000081 CAAGGTCAGG CGTCCTGCTG GCGCCCTCTC GCCACCCTGC CCTCCCGTCA GAAGCCCGGC TCCTCGCCGG GGAAGGCCGG 000160 000161 ATGCTGGCCC GCCGGGACCT GGGACTTGTG CCACATGGAG TGTCGGGAGT CTCCATTGCC GCGAGTTCTA CACCACAGGG 000240 000241 CCAGGCTGTT TGCTCCCCAT CGGTCGCTGC CCCCAGCACC CTGTTGTTAT TAAGGACTCA TTTGCTTGGA GCGGCATCAT 000320 000321 TACAAGGGTG TGGGGTCGCG GCTCCTTTGT CCAGGACTAC GCAGGGGCTT GACCCCAGGG CGCTGGTTTA GGCCGGATCT 000400 000401 GGGGTCCCTT GTCACTCCCA GGCTTCTTCC ACTTCCGAAT TCTGGAGAAC CGGGAATCAA GCCCTGCGCG TTCCTCTTCT 000480 000481 TCCTCCTTCG TGCCGAAAGC ACGCTTCATG TCTGCCAGGG CATCAGTTCT GAAACACCAG ATACTGCTAC ACCATCTCAT 000560 000561 CGGCATGGAC CTATATGTGG CAGCAAGTCC ATCTCATCGC TTTTGGTGAA AGTCAGTCCA GTTTGTAAAG ATTCTCATTG 000640 000641 TCACTGTAGA CGAGGAACTG GGACACCAAA AGGAGAAACT CTGGCCACGC TTGCACCCTG TTCCCAATCC TGGTCCAGTG 000720 000721 TCACCCACAG ATGGTAAGGA GCTCTAGAGA CCTCACCAGC CCCTGGGATT GGTCACCTCA CTCTTCTATG GACAGAGATT 000800 000801 CCTGCTGGGA TCCTTTGAGG GCAAGCAGAC CCTTCTTCCA GCTCGGACTG TGAACTCCAC TGCAGCCGTA AGGACTGTCT 000880 000881 GTGACAGTGA GCCCGAGATG ACTGGGCTCT GTGCTCCCTC CCGGCCCTCC AATCCTTGGC CTGCCACAGA GAACTGAGCT 000960 000961 CTTTTATTAG CACCATGAAT GTGACTGATA CAGCTAGCCA TTCCCTTGTG CGAATGACTC AGTTTATTAA TGCTCTGCTA 001040 001041 AAGATGGCTT CTTTGCTTGC CAGCAGCCTT AAACAGTATT TCATTAAAAC TGGCTTAATT ATTTTGAGAA GACGGCCCAA 001120 001121 TTAAAAGCTA TACACTCCCT CTATGTGAGT GTTTATACAT AGAGCTGTAT ATATAATACA TATTTGTAAG TGTGTATATA 001200 001201 TATATGTGTG TATGTATGTG TCTATAAATA TATAGGCTTA GCAATTTCAT TACATGGGAT AAATTGTTGG AAAAAATACC 001280 001281 CAGGAGCTGG TCCCCTTTCT GTTGCTAGAT TCAGAGTAGA GGCCACCCCT CCACTCTGGG AGAGGCTGGT GTTGGTGATC 001360 001361 TCTCAATGAC TCTGCAATGG AAGTCCCAAC TGCACAGAGC CCTGCCCCAG TTTCAGGAGC CAGCAGCCTC GGAGAGGCGG 001440 001441 ATCCTGACCT CTGCTCTGCT CTTGGGATAG CCTTTCCCTT CCCAGCAGGG TTGAGATACT TGGGCCGGGA AATGTTGTGG 001520 001521 CAAAGTGTTT GCCAAAGCTC AGGAGAGACA CAGACTTGGG GCTTTTGTTT CTTGAGCTGG CTGTCTAGCT TTCCTAATGA 001600 001601 GCAAATATGT TCTCTTTAAG GAAACAAACA AACAAAGCAA AAACACCAAT TCATCTGGAT TTTATTCATT TGTTTTAAAT 001680 001681 ACAAACAAAC AAAAGGAGAG TGGTTATTTC TGCACCAACT ATTTCAAATG CAAGTTACTC CATCGCTCGG GGTGGTTGGA 001760 001761 TGGTGCTTGT CACCATAGGA CCCACAGGGC TAGTTCCAAC TGTTATTCGG TAAGGCTTTT TTCTTTCCAA AATTCCCAGT 001840 001841 GTTCCTTTAA GGCCCATTTA GCTGCGGGTT TTGTTTATTC TCCCGGCAAT CAGCATTTAA AATAAGACAA ACAAGCATTT 001920 001921 TTTCCTGGGC TGTGAATCCC CCCGGCCAGC CTCCACCTGC ACACCTGAAG CCAGCATGTC CAATCAAATT TCTCTGTAAC 002000 002001 CCATATCCCC TTTAGAGACT TGCCCCCGTC GTATACCAGG CTGGAAATAG AGAACTTAAG CAGGGCAAAT GTAATTTTAA 002080 002081 GAATTGCTAA TGATGCTAGA AATCTGCAAT GCAATTAGCG TCATTGGATT TGGCGCTCCT CCGAAGGCAC AAAACTCCTT 002160 002161 GTCATAGCGC AGTGGCAGCA GCGGCAAGTG CCTCCGCATG TGCCGGGCTG TCCGGGTATG CTGGCAGCCG CTTTGCACTG 002240 002241 AGATGTGAGC AGTTGGTTAG GCTTCCTCTC TTTCTTTCTC ACAGATACTG ACTTCTTTGT CTCTTTTCTG GGTTGCAGAG 002320 002321 GGATGGGTAT TTTCCATTGA TTATTACTTT AGCATTTGAC CCTCCAGTGG AGTCACCCTG TTTTTTTTTT AGAAAACTGA 002400 002401 GACTCTCACT TTGTGAATTC ACTGTGCTCT CTGGGATTTC AGTGCTGTAG TTCAACCACC AATCCCCCTG TCCTGAACTC 002480 002481 CAGTACTTCT GATGCTATTA ATTGGTTCCT CAACAATTGT GGCCTTTTCC ATCATTGCCC ACCATAGTAT ATACTTTTTC 002560 002561 TTTCTCTCTC TTTTTTCTAA TTTCCTTGTC TTCTTCACTC TCCATGGAGC CAGAGGTAGT ATGAAGAGTT AAAAATAGGA 002640 002641 ATATAAAGAA AGCCAGAGGG ACAGAGGGAG TGAGAAAGAA AAATTTTAAA AAGGGAGGAA ATGAATTATT GGATTAAAAA 002720 002721 TAAACTTTTA CTTTTTTGCA GAAAAATTAT TTTTGCTCTC TGGGAAAATA ACATGGGCCA GGCATAAAAA GCATGTCAGC 002800 002801 TGGCTAAAAG ATTGCAAAAT CCAGAAGATG ATCTCGATGT GTCTGTTCAA TTTAGCAAGG GTATCTACTA GGGGATCCTC 002880 002881 TTTTAAATAT GGAGGCCCAA ATCAGAAGCT TGTAGAGGGG AGCTATTCTT CCAAGATTCC AGATGTGTCT GTGAGACAAC 002960 002961 ACGTTATGGG GCAAATTGAT TTCACCCTTG GGAAACCAGG GAGATTTTCA AAGTTATGTC TGCAAAGCCA GCTAATGCAA 003040 003041 TTCCCCATTA GTGCATTAAA GTGCGCCCTT ATTAATTCAA ACATAAAGGC AACAAAATAA GCTTTTAAAT TTAAAATATA 003120 003121 ATACATATAT AATGAGCATG TGTGAAAGCC TTATTCAAAT GAAAATACAG GAGTGTTTGA ACTACTGAGG TATCTTTTGT 003200 003201 ATTGAATTAT GAGCATATGT AATAGATTTA ATTATTAATT TCCCCATTGT TCTATGCACA CAGACAGGGT TCAAGGCACA 003280 003281 GTCATTCTCT GGCTTTCATA GATCTAATTT GTATAATTAT TGCCTGAATA AAAAATTGCT CCAA |
Predicted Small Protein
Name | NONHSAT004288_smProtein_1376:1618 |
Length | 81 |
Molecular weight | 8560.5923 |
Aromaticity | 0.1125 |
Instability index | 58.03875 |
Isoelectric point | 4.00238037109 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0473896356249 |
Amino acid sequence | MEVPTAQSPAPVSGASSLGEADPDLCSALGIAFPFPAGLRYLGREMLWQSVCQSSGETQT WGFCFLSWLSSFPNEQICSL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLE ELLHHHHHHLLLLLLLEELL |
PRMN | - |
PiMo | - |