NONHSAT004594
Revision as of 19:32, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004594 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1271 nt |
Genomic location |
chr1+:95007516..95008786 |
Exon number |
1 |
Exons |
95007516..95008786 |
Genome context |
|
Sequence |
000001 GGATGACTCA CCCCAGTGAT TCAACCGCGC CACCGAGCGC GGAGCTGCCC TGGAGGACGC AGGCGGGTCT AGTTGCCCGG 000080
000081 GTCCCCCAAG GCCCCCGGAT TCACCCAGGC CCGCGACTCC GACGTGCAGC TTAGGTGGGT TGCAGGTCTA TGGCAGGAAA 000160 000161 GGGAGGGCGC CTTGGAAGAA TTCTTCCCTT CCATTTGGTG ATAAAGTGGG AGAGGCGGCA TTTACAACAT TTAATAGAAA 000240 000241 GCACGGGCTC TGGGCTCCCC TCGGGCAGCG GAGGGCATTT CCCGGATGCT TTGCCCACCT GGGGCAGAAG CTCGGGACCT 000320 000321 GCAGCGAAGT AAACGTGTGG CTGTGAGCAG GGCCCTCTCC CAGCCACGGT GGCTTCTTCT ACCCCACGAA GGTCAAGAAT 000400 000401 ACCTGGCCTG CCCACCTCGC GGGGCCCTTA GCGGGTCGCA CAGGAGAAAG GCGGTGGGAA TGCCGGTGTC AGCCACGGTG 000480 000481 TGACCGGCTC GGCTCACAGG TCTGAGGGTC AGTTGGCTCA GGCATCGCCC GGTACGACCA GAGATAGTGA CTGAGGAAGA 000560 000561 GCAGCCTCAC ATCTGGCAGT TTGCCTCTGG GAGAATTCCA GCGTGACATC TGCAGCTCTG TGGTTCCAGA AAGGATGGTT 000640 000641 CCCACATTGA AGAAGACATC TGTGGGACTG AGTTCCACCG AAATGCAGAG GAACCAAAAA TGAAAATGAA AAATGTAACC 000720 000721 AGAGTTGTGT GCCACTAGTT TTAAGCTTTG GTTTTTCTAA ATTATTTTCT GGCTTCTCCT TCTGGGCTTT GCTGTAAACT 000800 000801 TGCCAAGCAT GAGAACAACT CTTCATCTAT TGAGTGGCAT TTTAAGCCAT CCTGTCAAAG TATCTCCTGT CATTTTTATT 000880 000881 ATTATTACTC TATATTGCCT GCAAGACACG ACTGGAGAAT TCTTAGTGTA AGAATTGTTT GTTTCCTCTC TCCTTCTTTC 000960 000961 CCACGTTTTC CCAGGGAAGT CAGTCTTGCA TTTTAATGCA TACTATATAC ATATCTCGTT TAGCTTACTG AACCACTTGT 001040 001041 TTTAACAGAA TAAAACTGTG CAAAATTTTA ATTTTCCTCC TTTGCCTGAA CTGAAATAGC ACATCCAGGT TTAGCCCTTG 001120 001121 TAGACTTTCC TTCCTCGAAG CAGAAAGTTG CCCTTGATGA TTTCCTCTTT GAGCTCTCTG CCAGCTCTGA AACCCACAAA 001200 001201 ATTTATGTTT GCAAAACTAA GCCATGCAAT CCTCTTTTTA TGCAGGCTCT AGCCTGAGTC ATTTTCCCTA A |
Predicted Small Protein
Name | NONHSAT004594_smProtein_149:331 |
Length | 61 |
Molecular weight | 6384.2564 |
Aromaticity | 0.0666666666667 |
Instability index | 68.0616666667 |
Isoelectric point | 11.4515991211 |
Runs | 6 |
Runs residual | 0.0497340425532 |
Runs probability | 0.0494170641229 |
Amino acid sequence | MAGKGGRLGRILPFHLVIKWERRHLQHLIESTGSGLPSGSGGHFPDALPTWGRSSGPAAK |
Secondary structure | LLLLLLLEEEELLEEEEEEHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |