NONHSAT004676
Revision as of 19:33, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT004676 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1336 nt |
Genomic location |
chr1+:95975896..95981019 |
Exon number |
2 |
Exons |
95975896..95975918,95979707..95981019 |
Genome context |
|
Sequence |
000001 AGAAGCTGGA GGAAAAGCAG AAGGGCGCTG AACACTGACT AAGAGGAGAG AGCGCACATT ACATGGAGAC CATGGTCCCC 000080
000081 ATACCAGAAA CATGAGAGTA GAGAGAAGCA AAGCCAGCAT CGTGGAGCCA GTCCCTTTAT CCAGGATCTT GGAGGGATAC 000160 000161 AGTCTTCTGT AGAAATTAAA TAAAGACTGA ATTCTTCAAT GGGTATTTTG AGAAGAGAGC CACTGTAAGC TTATACACTG 000240 000241 TGAATTGCAA AATGTTACTG CCTCTGGGTG GACAGGTTTT AAAAAGACTT TTTTTTTTCC TCCTggcatg gctgacagag 000320 000321 ggaaggctgg gtttcaatcc catctttccc ttcccttgcc cagtgcttct ttatgtgcac aacctgcaca actatatgtg 000400 000401 gTTTGCAAAC ACGCATAAGC AAAGACTAAC AGCTTCTGAA ACAAACTCTG AATAAAAGAG GGAGCATATT AAGGCAGATG 000480 000481 GCAGAGGAGG TGAGCAGCAT GGGCAGATAG AAGCATCACA GAGACTACAA GAAGAATGTG CCAGACCGGC TCATAGTGGC 000560 000561 CACACTGATT AAGAATTACC ATCAGCTCTT TAGGATTTGG AAACTTGGAA ACACATTGTG TGTTCTTCCT GGTTTGTTAT 000640 000641 AGAGTATGTG TATGTACTTC TTTCTCTTAA AAATAtttat ttttaaagaa ttgacttata aaattatatg tatttgtcat 000720 000721 gtataacaca atattttgaa gtacagtcct gtgtcataag gatatgttct gagaaatcca tcaattttgt cattgtataa 000800 000801 acatgataga gtgtatttac acaaacctag gtggtataaa ctactacaca cctaggctac ataatgtagc ctattgctcc 000880 000881 taggctataa acctgtataa catgctactg tactaaatac tatagacaat agtcacatac tggtgagtat ttgcgtatca 000960 000961 aaacatatct aaatatagaa aagatgcagt aaaaatatgg tattacaatc ttatgagacc actatagtat atgaggtcca 001040 001041 tcattgatta aaacatagtt atatggtgca tgactgtata tatgcattgt ggaatggtta aatctagcta actaacaaat 001120 001121 gtgttatatc acatagttat tatttttgag gtgagaatac aatattcact ctcttagcat tttttaagaa tacagtatat 001200 001201 taactatagt caccatgctg aatggtagat ctctggaact aatttctcct atctaagtgt gattatgtac cctttgacca 001280 001281 acatctttct aaccccaccc cacaaacacc ccataataaa gcctcttgta accacc |
Predicted Small Protein
Name | NONHSAT004676_smProtein_251:454 |
Length | 68 |
Molecular weight | 7850.1505 |
Aromaticity | 0.164179104478 |
Instability index | 57.5029850746 |
Isoelectric point | 9.10125732422 |
Runs | 6 |
Runs residual | 0.0537626006095 |
Runs probability | 0.0445298239416 |
Amino acid sequence | MLLPLGGQVLKRLFFFLLAWLTEGRLGFNPIFPFPCPVLLYVHNLHNYMWFANTHKQRLT ASETNSE |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLEEEEHHHHHHHHHHHHHHHLLLL LLLLLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLL |
PiMo | iiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii iiiiiii |