NONHSAT004794
Revision as of 19:33, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004794 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
818 nt |
Genomic location |
chr1+:100889288..100908670 |
Exon number |
3 |
Exons |
100889288..100889857,100905488..100905554,100908490..100908670 |
Genome context |
|
Sequence |
000001 TGATTTTATT GAGTGTCTAG AGAGCAACAC TGGCTTTCCT CAAGAGTAGG CTGAAAATTC AGTAGATACC CCATGGATAT 000080
000081 TGTGCTCACT GTGAGAAGTC TTTCAAAATT TACCAGGCAC TGAAATAACT CACCTCAGGT CTTCGATGAA GGTCAGGGAG 000160 000161 GTGTGCGTTG GTCTTTGGTG AGCACACGGT ATATTATGAG GGTACAACTG TCGCTGCCAT TGTGTCTGTT CAGTGTGCCT 000240 000241 TTGTAAAGAG CCTGGGATGG CCTCTTCATG GATCTGCCCT CTGTCTCTAA GCTTACCCAT GGAGAAGACA AAGGCTGCTG 000320 000321 CGCAGCTTCA TGCTGAAAAG GAAATGTTGG CAAGTTGTTG CTTTGTAAAG ATCAACACTA TCACCGTAAC AGCTGTCACT 000400 000401 CAAAGTGGAG GAAGTGAAAT GCAAATTTGG TGAGTAATTA GTTTTGTGTC ATTCTTGGGT GTTCTAAATG TTACTATTTA 000480 000481 TCTGTCTTAG GTAATCTATT TAAAGAAGAC ACCAGAAGAA GCCTACAGAG CACTCCTGTC TGGCTCAAAC CCCCCCTATC 000560 000561 TTCCATTCAG GGATGCTTCC TTTGGAAATT GCACTTACAA TCTCACCATT CTCGACTGTT TGCAGGGAAT CAGAAAGGGA 000640 000641 TTACAACATG GATTTTTTGA CTTTGAGACA TTTGATGTGG ATGAATATGA ACATTATGAG GTTTGTACAT TTAATTTTTT 000720 000721 TTACAAAACA TAATTTCATG TTGATTAATT TTTTCCCCCT GTCACACTCA TGTATTGCAA ATCGAGTGGG TGCTAAATAA 000800 000801 AAGCATTCTG GAGTTTTC |
Predicted Small Protein
Name | NONHSAT004794_smProtein_572:799 |
Length | 76 |
Molecular weight | 8953.599 |
Aromaticity | 0.133333333333 |
Instability index | 44.5066666667 |
Isoelectric point | 8.84283447266 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0761670761672 |
Amino acid sequence | MLPLEIALTISPFSTVCRESERDYNMDFLTLRHLMWMNMNIMRFVHLIFFTKHNFMLINF FPLSHSCIANRVGAK |
Secondary structure | LLLLEEEEELLLLLLLLLHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEEEL LLLLHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiii |