NONHSAT005002

From LncRNAWiki
Revision as of 19:34, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005002

Source

NONCODE4.0

Same with

,

Classification

sense

Length

498 nt

Genomic location

chr1-:109358765..109363200

Exon number

3

Exons

109358765..109358924,109359496..109359799,109363167..109363200

Genome context

Sequence
000001 CCTTTAAAGG TGAACATGAG CCCACACCAG GAAAAAAAAA ACTTCAGGCT TTCATGACCT ACAGCTCAGA CCCTGCAACA 000080
000081 CCCTCACCCC ATTTCTACTC CTGCAGGATT TCTGGAAGCA AATCCTTATG TGACTTTGAT AGCACTGAAG AAATAAAATC 000160
000161 TGAGGTGAGG ACTTAGAAAA TCATTCGAGA AGCATTGCAG CTCGTAAGTT TGATCTTGAT GCCCACAGAA CTGGCAGCTC 000240
000241 TTAAGTTATT ACAGTATCAG AGCTTCAGAA AATGCTCTGC TAAAGACAAT TTTGTGCTCA GAACTAAGCT AAAGACACAC 000320
000321 AGCCTCAGCA GTCGCAAGAT TTTAAACTCG GCTTTGGATC ATGCCCTAAG GACAGCAACC ATTTTGAAAG AAACTACAGA 000400
000401 TCAAATGATT AAAACGATTG CAGAAGACCT TGCTAAAGCA CAGAGGTGGA GGAATCGACT GAAATACTAG TTCAACGCTA 000480
000481 GGCTACCAAG GATTCAAA
[back to top]

Predicted Small Protein

Name NONHSAT005002_smProtein_218:469
Length 84
Molecular weight 9633.1933
Aromaticity 0.0602409638554
Instability index 40.4445783133
Isoelectric point 10.2875366211
Runs 8
Runs residual 0.043641231593
Runs probability 0.0175763999293
Amino acid sequence MPTELAALKLLQYQSFRKCSAKDNFVLRTKLKTHSLSSRKILNSALDHALRTATILKETT
DQMIKTIAEDLAKAQRWRNRLKY
Secondary structure LLHHHHHHHHHHHHHHHHLLLLLLEEEHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHHH
HHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -