NONHSAT005002
Revision as of 19:34, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005002 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
498 nt |
Genomic location |
chr1-:109358765..109363200 |
Exon number |
3 |
Exons |
109358765..109358924,109359496..109359799,109363167..109363200 |
Genome context |
|
Sequence |
000001 CCTTTAAAGG TGAACATGAG CCCACACCAG GAAAAAAAAA ACTTCAGGCT TTCATGACCT ACAGCTCAGA CCCTGCAACA 000080
000081 CCCTCACCCC ATTTCTACTC CTGCAGGATT TCTGGAAGCA AATCCTTATG TGACTTTGAT AGCACTGAAG AAATAAAATC 000160 000161 TGAGGTGAGG ACTTAGAAAA TCATTCGAGA AGCATTGCAG CTCGTAAGTT TGATCTTGAT GCCCACAGAA CTGGCAGCTC 000240 000241 TTAAGTTATT ACAGTATCAG AGCTTCAGAA AATGCTCTGC TAAAGACAAT TTTGTGCTCA GAACTAAGCT AAAGACACAC 000320 000321 AGCCTCAGCA GTCGCAAGAT TTTAAACTCG GCTTTGGATC ATGCCCTAAG GACAGCAACC ATTTTGAAAG AAACTACAGA 000400 000401 TCAAATGATT AAAACGATTG CAGAAGACCT TGCTAAAGCA CAGAGGTGGA GGAATCGACT GAAATACTAG TTCAACGCTA 000480 000481 GGCTACCAAG GATTCAAA |
Predicted Small Protein
Name | NONHSAT005002_smProtein_218:469 |
Length | 84 |
Molecular weight | 9633.1933 |
Aromaticity | 0.0602409638554 |
Instability index | 40.4445783133 |
Isoelectric point | 10.2875366211 |
Runs | 8 |
Runs residual | 0.043641231593 |
Runs probability | 0.0175763999293 |
Amino acid sequence | MPTELAALKLLQYQSFRKCSAKDNFVLRTKLKTHSLSSRKILNSALDHALRTATILKETT DQMIKTIAEDLAKAQRWRNRLKY |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLLEEEHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |