NONHSAT005121
Revision as of 19:35, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005121 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2003 nt |
Genomic location |
chr1+:110954681..110961080 |
Exon number |
4 |
Exons |
110954681..110955861,110956713..110956853,110958631..110959099,110960869..110961080 |
Genome context |
|
Sequence |
000001 tgttgccagg ctggtctcga actcctgcaa tttgctctcc ttggcctcac gaaatgctgg gattacaggc ataagctaca 000080
000081 gcacccagcc CTTACGTTTA CTTTTCATTG ACAGGAAGAG TGTCTTCATC TCTGCATCCC TAGTGCAACA GAGCATGACA 000160 000161 AAAATTCAAC AAATATTTAT TGAAGAGTCT TGATGTCTTT TGGGAAAGGA ACTCTATGGT TACCTTTACT CTAAGGTAAA 000240 000241 GAAATTTAGG TCCTGAACTT TAACCACCTT CTCCTCTTCT TTCTTCCCTC TTTCATAAAT GAGCTCTTGG AAAATTAAAA 000320 000321 TGCCAGGAGG GTCCAGCAGA GAATACCCAA GCCCACATGT CCTGATGGGA AGTGGGGGAT AAGTAGAGAG GGAAACACAG 000400 000401 ACCCTGTAGG CCATCTCACT GCTGCTGGCC CAGGGGACCC TAACTCCTTT TGTTGACTCA TCAGAAGTAG AATCCTCCTG 000480 000481 AGGGTCTGTT TAAGAAGCAC AGCTCTGGTA GAAAGGGTAG CTTTCCTATG GGTACGGAGG GCTCTGCTAC CCCAGGGCTA 000560 000561 TCCACACTGG CCTGTGAATC ACTCTCAAAT GCTTAGGGTC ACGGGCTTTC AGTGGAATGA GCCCTCATGT GCCACCAGGG 000640 000641 GGCACCAAGG CCACAGAAAA CCCTATTCAG AAGGTTCTGG GGTGAGGGAA AGGAATCCAC GGGTTTGTGG AGCTGGCGGA 000720 000721 GCATGGGTGA GGACAGCATT ATGCTAGGTT GGtggccttg aagtcagatg taaattggga tcctggcttg gccactgact 000800 000801 atccatggga actttgaatc tcagggggct catttgtgat gtgggggtac cattatctgc ctcatcaggt tgtggggagg 000880 000881 attatatgag ataccttatg taagaggggc tggtgcattg tggaagtCAA CAAGTAAGTT TTGTTAAATT TGAGTAAGAA 000960 000961 GACCTGTTTG TTTCCTCAAG TTGCTTATAA TCTAGGTGAG GACACATCTG AGAGAATAAC TAATAGTTCA GTGAAGGTAA 001040 001041 GAGCCAAATG ATTGGCACAG ACCTCAAGTG GTCTGGCATT TACGGGAGAG GGGGATTGtg aaacaggaat tgaaagaaat 001120 001121 ttaaaaatgc ataagcaaaa actcagttta tgttttaaaa aaaccaattc cccctgagaa aAGGGTCTCT CGGtcctcac 001200 001201 agcatttttg aagtagctaa catcactatc ccccttttac agttaaaaac aacaacaaca acaacaaaaa cacaaaaccc 001280 001281 tgaggctcag aagataaata tttgctgaag atcactgtgc ttATTAGATG GGTGTTACTG ATTCTTACCT CAGAGAAGAG 001360 001361 AATGTCATGG AGACAAAATG ACCTGCTTAG AGTTCTGCAC CCCCCAGCAT GGAGAGCAGA GCGCAAAGAT TTCTTCCGGA 001440 001441 CTCCCACATT CCCCTTGGAA TCCAAGAACT GGTCTACTGT CACAACACTT TAGTACCCTC Ttgtaagcct gtggacaaat 001520 001521 cctctgatgc cttgatacct cggttttccc ccactataaa tgggaagata aattcactag aaacagtact taccttgcag 001600 001601 tgtcattatg agaatttcat gagacaatgc aatataaagc tcctagcaca gttccaggca ccattgtaag cactgaacaa 001680 001681 atgaaagctg ttgtcattAG GATCTCAAGA AATGACAGCT GAGGCAAATG TGGATTAGAC TGcattcagc attcttagct 001760 001761 gcaagcaaca gaagctgacg ctggtttaaa gCTCCCAAGG AGGCAGCAGA AACTGGGGTA ATCACAACGG TCAACAGCAG 001840 001841 CAAAGGCAGC ACTTTCTGAT TTACTTGACT GCTATGGATG CCACCTCTCT CCACGCCTCA GTTTAATATC TGTAAGTTTG 001920 001921 GTCAGTATCT CATTCAAGAA CATTGCATTT ACTCTGGTAC TTAAAGATGA AAAATCAACA tttacaaagc agatccattg 002000 002001 tca |
Predicted Small Protein
Name | NONHSAT005121_smProtein_626:760 |
Length | 45 |
Molecular weight | 5224.9365 |
Aromaticity | 0.159090909091 |
Instability index | 61.35 |
Isoelectric point | 9.29888916016 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0493434611082 |
Amino acid sequence | MCHQGAPRPQKTLFRRFWGEGKESTGLWSWRSMGEDSIMLGWWP |
Secondary structure | LLLLLLLLLHHHHHHHHLLLLLLLLLLEEEEELLLLEEEELELL |
PRMN | - |
PiMo | - |