NONHSAT005971

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005971

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2569 nt

Genomic location

chr1+:146011091..146025308

Exon number

11

Exons

146011091..146011246,146012141..146012254,146012696..146012883,146013573..146013697,146016822..146017059,146019014..146019130,146019697..146019923,146020854..146020997,146022080..146022218,146022524..146022570,146024235..146025308

Genome context

Sequence
000001 GAATTGCGAA AAGCCTTGCA GCAGCTACAA GAATTGCAGA ATAAGAGCCA ACAGCTTCGT GCCTGGGAGG CTGAAAAATA 000080
000081 CAATGAGATT CGAACCCAGG AACAAAACGT CCAGCACCTA AACCATAGTC TGAGTCACAA GGAGCAGTTG CTTCAGGAAT 000160
000161 TTCGGGAGCT CCTACAGTAT CGAGATAACT CAGACAAAAC CCTTGAAGCA AATGAAACGT TGCTTGAGAA ACTTCGCCAG 000240
000241 CGAATACATG ATAAAGCTGT TGCTCTGGAG CACTCCCAGG AGATGGAAAG CCTGAGGGAG GCTCTGCTGT CCTCTCGATC 000320
000321 CCACCTTCAA GAGCTGGAAG AGGAGCTGGA GCACCAGAAG GTGGAAAGGC AGCAGCTTTT GGAAGACTTG AGGGAGAAGC 000400
000401 AGCAAGAGGT CTTGCATTTC AGGGAGGAAC GCCTTTCCCT CCAGGAAAAC GACTCCAGAC TGAAGCACAA GCTGGTTCTC 000480
000481 CTGCAGCAAC AGTGTGAAGA GAAACAGCAG CTCTTTGAGT CCCTCCAGTC AGAGTTACAA ATCTATGAGG CACTTTATGG 000560
000561 CAATTCCAAG AAGGGGCTGA AAGCTTACAG CCTGGATGTC TGTCACCAAA TCCCTTTGAG CAGTGACTTG AGCCACCTGG 000640
000641 TGGCAGAGGT ATGAGGTCTG AGAGGGCAGC TGGAGAAGAG CATTCAGGGG AACAATTGTC TGTGACTGCA GCTGCAACAG 000720
000721 CAGCTGGATA GCCTGCTGGC AAAGCCAGCC TCAGCCCCTC CTCTGTTAAC CAGAACTTCC CAGCCAGCGC TGACCCTGGA 000800
000801 AACAAGCAGC TGCTCCTCCA AATTCAGCTG TGTCCCCTCC AGTCCGGGAT GTTGGTATGA ATTCCCCAGC TCTGGTCCTC 000880
000881 CCCAGCTCTG CTTCCTCTAC TCCTGGCTCA GAAACGGCCA TAATCAACAG AACACATGGC TTGGGTTTGG ATACTTCTCC 000960
000961 AGTAATGAAG GCCCCTCCCA AGCTGGAGGG TGATGCTACT GATGGCTCCT TTGCCAATAA GCATGGCCGC CATGTCATTG 001040
001041 GCCACATTGA TGACTACAGT GCCCTAAGAC AGCAGATTGT GGAGGGCAAG CTGCTGGTCA AAAAGATAGT GTCTCTTGTG 001120
001121 AGATCAGCGT GCAGCTTCCC TGGCCTTGAA GCCCAAGGCA CAGGGGTGCT AGGCAGCAAA GGCATTCATG AGCTTTGGAG 001200
001201 CAGCACCAGT GCCCTGCACC ATGCCCTAGA GGAGTCGGCT TCCCTCCTCA CCATGTTCTG GAGAGTGGCC CTGCCAAGCA 001280
001281 CCCACATCCC TGTGCTGCCT GGCAAAGTGA GAGAATCGAC AGAAAGGGAA CTTCTAGAAC TGAGAACCAA AGTATCCAAA 001360
001361 CAGGAGTGGC TCCTTCAGAG CACAGCTGAG CATCTGAAGA TCGCCAACCA GCAGAAAGAG AGCATGGAGC AGTTCATCGT 001440
001441 CAGCCAGCTA ACCAGAACAC ATGATGTTTT AAAGAAGGCA AGGACTAACC TAGAGGTGAA ATCCCTAAGG GCTCTGCCAT 001520
001521 GTACTCCAGC CTTGTGACCC TTGCCTTCCA GGAACCATGC AAGAAGCGCA GCCACCGGAA GTCCTTAAAA CAGCAGGAAA 001600
001601 GGTTGGCCTG TCCCCCTTTT GTGCAGCTAC CTATCTGCTG AGGAGCATCT GGGCCTCATT CCTCCAAGTC CACTGGAGGG 001680
001681 TCCAGAAGAG GGAGTCAGAG TTGTATCCTG GTGGAGCTGG CAGAAAGGCA GAAAGCCTTT CTGACAGCTA TGGAATACGA 001760
001761 TTAGCCAAGG TCCACTTGGC CCAGCACTAA GAAAAAGATG CGTAGTTTGC ACAGAAGGTT TTGTGATCCT GCCTCTCAAC 001840
001841 AGCCCCAGCA GCTTGGGAAC TAGCAAGAGC ACATTTCTTG CCTCATCAGC TGTCCTGAGA TGGAAAACTC AGTGAATATA 001920
001921 GGACCCTGAT TCTGATGAAT GGGGCACGTG GTCCTATTGC TGGAGCTCCT CTGGCAGGTT CTAAAAGCAC ACTACGGAGC 002000
002001 AGCGGTGCCC TGCCAGACAC TGCTCGTGGG GGCTCAGTGA GCACTACTCA CAGATCCACA CCTGACCCTG TTGGGTCAAG 002080
002081 TCAGGCTGGG TTTTGGTCTG CACTGTAGCA CCTGCGTTCT TTGAGTTCAC ATCATGAATG TGGTGACTTC CCAGATACCA 002160
002161 TCTCAGGCTT AACCTAGCAC ATCCTATTTC TTTTCTTCTA TGATATCCAA ATTGGACTGA CCTCACTTCA AATATCTTGT 002240
002241 CCCATTTTGT CGTCCTATCT TACCTCGGGG AAATTGGGGA CTGATGGCCA GACCAATTCT GTTGAAATTC TTGCATAGAG 002320
002321 CAAACCTGTG CTCATTTTTA AGTGGCATGG GAGAGGCCCC CAGCCATAGT AAAGCCTAGT CTGTGTCTTC ACAGTTTTGA 002400
002401 TAGAATGTGC TTGTGTGTAT AGATGTATGA TACAGATTTA TTTATGTTGC TATCGCCATA TATTGAAGGC CAACATAACT 002480
002481 GGTGGACAGG GTGGGTGACA GAAAATGAAA GCCTTTTTGG TGATTGTTAA AGCAAAATGT GTATAAAGAA ATAAATAGTT 002560
002561 GTTCTTTCA
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Predicted Small Protein

Name NONHSAT005971_smProtein_1556:1789
Length 78
Molecular weight 8565.7597
Aromaticity 0.0909090909091
Instability index 44.6194805195
Isoelectric point 9.57733154297
Runs 9
Runs residual 0.0191981931112
Runs probability 0.0420027871008
Amino acid sequence MQEAQPPEVLKTAGKVGLSPFCAATYLLRSIWASFLQVHWRVQKRESELYPGGAGRKAES
LSDSYGIRLAKVHLAQH
Secondary structure LLLLLLHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLEELLLLLLLLLLL
LLLHHHHHHHHHHHHLL
PRMN -
PiMo -