NONHSAT005971
Revision as of 19:38, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005971 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2569 nt |
Genomic location |
chr1+:146011091..146025308 |
Exon number |
11 |
Exons |
146011091..146011246,146012141..146012254,146012696..146012883,146013573..146013697,146016822..146017059,146019014..146019130,146019697..146019923,146020854..146020997,146022080..146022218,146022524..146022570,146024235..146025308 |
Genome context |
|
Sequence |
000001 GAATTGCGAA AAGCCTTGCA GCAGCTACAA GAATTGCAGA ATAAGAGCCA ACAGCTTCGT GCCTGGGAGG CTGAAAAATA 000080
000081 CAATGAGATT CGAACCCAGG AACAAAACGT CCAGCACCTA AACCATAGTC TGAGTCACAA GGAGCAGTTG CTTCAGGAAT 000160 000161 TTCGGGAGCT CCTACAGTAT CGAGATAACT CAGACAAAAC CCTTGAAGCA AATGAAACGT TGCTTGAGAA ACTTCGCCAG 000240 000241 CGAATACATG ATAAAGCTGT TGCTCTGGAG CACTCCCAGG AGATGGAAAG CCTGAGGGAG GCTCTGCTGT CCTCTCGATC 000320 000321 CCACCTTCAA GAGCTGGAAG AGGAGCTGGA GCACCAGAAG GTGGAAAGGC AGCAGCTTTT GGAAGACTTG AGGGAGAAGC 000400 000401 AGCAAGAGGT CTTGCATTTC AGGGAGGAAC GCCTTTCCCT CCAGGAAAAC GACTCCAGAC TGAAGCACAA GCTGGTTCTC 000480 000481 CTGCAGCAAC AGTGTGAAGA GAAACAGCAG CTCTTTGAGT CCCTCCAGTC AGAGTTACAA ATCTATGAGG CACTTTATGG 000560 000561 CAATTCCAAG AAGGGGCTGA AAGCTTACAG CCTGGATGTC TGTCACCAAA TCCCTTTGAG CAGTGACTTG AGCCACCTGG 000640 000641 TGGCAGAGGT ATGAGGTCTG AGAGGGCAGC TGGAGAAGAG CATTCAGGGG AACAATTGTC TGTGACTGCA GCTGCAACAG 000720 000721 CAGCTGGATA GCCTGCTGGC AAAGCCAGCC TCAGCCCCTC CTCTGTTAAC CAGAACTTCC CAGCCAGCGC TGACCCTGGA 000800 000801 AACAAGCAGC TGCTCCTCCA AATTCAGCTG TGTCCCCTCC AGTCCGGGAT GTTGGTATGA ATTCCCCAGC TCTGGTCCTC 000880 000881 CCCAGCTCTG CTTCCTCTAC TCCTGGCTCA GAAACGGCCA TAATCAACAG AACACATGGC TTGGGTTTGG ATACTTCTCC 000960 000961 AGTAATGAAG GCCCCTCCCA AGCTGGAGGG TGATGCTACT GATGGCTCCT TTGCCAATAA GCATGGCCGC CATGTCATTG 001040 001041 GCCACATTGA TGACTACAGT GCCCTAAGAC AGCAGATTGT GGAGGGCAAG CTGCTGGTCA AAAAGATAGT GTCTCTTGTG 001120 001121 AGATCAGCGT GCAGCTTCCC TGGCCTTGAA GCCCAAGGCA CAGGGGTGCT AGGCAGCAAA GGCATTCATG AGCTTTGGAG 001200 001201 CAGCACCAGT GCCCTGCACC ATGCCCTAGA GGAGTCGGCT TCCCTCCTCA CCATGTTCTG GAGAGTGGCC CTGCCAAGCA 001280 001281 CCCACATCCC TGTGCTGCCT GGCAAAGTGA GAGAATCGAC AGAAAGGGAA CTTCTAGAAC TGAGAACCAA AGTATCCAAA 001360 001361 CAGGAGTGGC TCCTTCAGAG CACAGCTGAG CATCTGAAGA TCGCCAACCA GCAGAAAGAG AGCATGGAGC AGTTCATCGT 001440 001441 CAGCCAGCTA ACCAGAACAC ATGATGTTTT AAAGAAGGCA AGGACTAACC TAGAGGTGAA ATCCCTAAGG GCTCTGCCAT 001520 001521 GTACTCCAGC CTTGTGACCC TTGCCTTCCA GGAACCATGC AAGAAGCGCA GCCACCGGAA GTCCTTAAAA CAGCAGGAAA 001600 001601 GGTTGGCCTG TCCCCCTTTT GTGCAGCTAC CTATCTGCTG AGGAGCATCT GGGCCTCATT CCTCCAAGTC CACTGGAGGG 001680 001681 TCCAGAAGAG GGAGTCAGAG TTGTATCCTG GTGGAGCTGG CAGAAAGGCA GAAAGCCTTT CTGACAGCTA TGGAATACGA 001760 001761 TTAGCCAAGG TCCACTTGGC CCAGCACTAA GAAAAAGATG CGTAGTTTGC ACAGAAGGTT TTGTGATCCT GCCTCTCAAC 001840 001841 AGCCCCAGCA GCTTGGGAAC TAGCAAGAGC ACATTTCTTG CCTCATCAGC TGTCCTGAGA TGGAAAACTC AGTGAATATA 001920 001921 GGACCCTGAT TCTGATGAAT GGGGCACGTG GTCCTATTGC TGGAGCTCCT CTGGCAGGTT CTAAAAGCAC ACTACGGAGC 002000 002001 AGCGGTGCCC TGCCAGACAC TGCTCGTGGG GGCTCAGTGA GCACTACTCA CAGATCCACA CCTGACCCTG TTGGGTCAAG 002080 002081 TCAGGCTGGG TTTTGGTCTG CACTGTAGCA CCTGCGTTCT TTGAGTTCAC ATCATGAATG TGGTGACTTC CCAGATACCA 002160 002161 TCTCAGGCTT AACCTAGCAC ATCCTATTTC TTTTCTTCTA TGATATCCAA ATTGGACTGA CCTCACTTCA AATATCTTGT 002240 002241 CCCATTTTGT CGTCCTATCT TACCTCGGGG AAATTGGGGA CTGATGGCCA GACCAATTCT GTTGAAATTC TTGCATAGAG 002320 002321 CAAACCTGTG CTCATTTTTA AGTGGCATGG GAGAGGCCCC CAGCCATAGT AAAGCCTAGT CTGTGTCTTC ACAGTTTTGA 002400 002401 TAGAATGTGC TTGTGTGTAT AGATGTATGA TACAGATTTA TTTATGTTGC TATCGCCATA TATTGAAGGC CAACATAACT 002480 002481 GGTGGACAGG GTGGGTGACA GAAAATGAAA GCCTTTTTGG TGATTGTTAA AGCAAAATGT GTATAAAGAA ATAAATAGTT 002560 002561 GTTCTTTCA |
Predicted Small Protein
Name | NONHSAT005971_smProtein_1556:1789 |
Length | 78 |
Molecular weight | 8565.7597 |
Aromaticity | 0.0909090909091 |
Instability index | 44.6194805195 |
Isoelectric point | 9.57733154297 |
Runs | 9 |
Runs residual | 0.0191981931112 |
Runs probability | 0.0420027871008 |
Amino acid sequence | MQEAQPPEVLKTAGKVGLSPFCAATYLLRSIWASFLQVHWRVQKRESELYPGGAGRKAES LSDSYGIRLAKVHLAQH |
Secondary structure | LLLLLLHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLEELLLLLLLLLLL LLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |