NONHSAT006214

From LncRNAWiki
Revision as of 19:39, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT006214

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1116 nt

Genomic location

chr1+:149576262..149672733

Exon number

3

Exons

149576262..149576700,149670209..149670452,149672301..149672733

Genome context

Sequence
000001 ACCCTCGGTC CCCCACGGCG GTTGGTCCGG GCGGGGGAAG GAGAAAGTGA GACTCGGTTT CATCACCAAT CCATCGCCAG 000080
000081 AAGGGGAGGA AATTGGAATC CAGCAGCGGC GAGCAGCAGC TGGGCGGTCA CATCTGGAAA TGGAAAGCCG Acctccccct 000160
000161 cctcctccac ctcctcctcc tcctcctcct cctcctcctc ctcTCACCCA GGATCACTTC CGAAACCACT TGGCCTTCAG 000240
000241 CCCCTGCCTC GGCCAGAGGT TTCATTTTTA ACTGAATATT TACGAAAGCT GAAAGCGTGC GAGGGGGGTG GGGTGGAAAT 000320
000321 AGCGGCTGCT TCTTTTCCAA GGATTTATTT AATGGGGATG TGTTCAAGGC AAGACCGAAT TCAGAAGGAT ATCGACGTCG 000400
000401 TGATCCAGAA GTCCAGAGCT GAGGACTGCC TGTTTGCAGG ACAACTGTGC AGACTACAAA GCTTCGGAAA ACCGGAGAGG 000480
000481 CTGAGTCGAC TAATCGTGTT GTTCCACGTT AGAAACGCTT GCATTGCCTG ACTCTGAAAC CAGAAGGGCG GCCGAATGGC 000560
000561 CTTCACCCTC CGTTAACCCT CGCCTGCTTC AGAAGCCAGT GCCTCTGGAA ATGCCTGGAT CTGCGACCCC AGCCTGAGCC 000640
000641 TAGTAGGGCC CAAGGGAAGC TGAACGCCCC GACGGCTCTC ATGGGCACCG GCAACAGTTT TCCGTTTGTG CCTACTCCAC 000720
000721 CTGCTGTCTT TGTTGGGTCA GCGAACATCG CCTCCCTCTA CCGCTCAATC AGCAAAAGGG ACCGCCCTTG AGGACCTCAC 000800
000801 CCGCCGCTCA CTCCCCTCCC AACTTCGCGG GCATCGCCTC CGGTCGCCTC TTCCGAAGGC CTAACGAGCA TGTTAGCTGC 000880
000881 GAACGGAGGT GAGGAGGCTC CGCTGACTGA CCGGTGCCCA TGTCCAGGGC ACGCACAAAC GCCATGACTT GGCTTGGCCT 000960
000961 CTCTCTTAGT TATTCACAGC TCAGCCCGAT AGGCACCTCC GGGGCGGCGA CGGCAAAGAG GGTGCCCTTA TTAAGTGCAG 001040
001041 CTCCACGGGG ACTGGCCTCT CTGCACGGCT GTGTACACCT GAGCGAGACG CTCAGTCGCT CTCTAAAGCC GCTTCT
[back to top]

Predicted Small Protein

Name NONHSAT006214_smProtein_680:790
Length 37
Molecular weight 3838.3516
Aromaticity 0.111111111111
Instability index 59.0638888889
Isoelectric point 10.9032592773
Runs 5
Runs residual 0.0415695415695
Runs probability 0.0237943826179
Amino acid sequence MGTGNSFPFVPTPPAVFVGSANIASLYRSISKRDRP
Secondary structure LLLLLLLLLLLLLLLEEEELHHHHHHHHHHHHLLLL
PRMN -
PiMo -