NONHSAT006214
Revision as of 19:39, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT006214 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1116 nt |
Genomic location |
chr1+:149576262..149672733 |
Exon number |
3 |
Exons |
149576262..149576700,149670209..149670452,149672301..149672733 |
Genome context |
|
Sequence |
000001 ACCCTCGGTC CCCCACGGCG GTTGGTCCGG GCGGGGGAAG GAGAAAGTGA GACTCGGTTT CATCACCAAT CCATCGCCAG 000080
000081 AAGGGGAGGA AATTGGAATC CAGCAGCGGC GAGCAGCAGC TGGGCGGTCA CATCTGGAAA TGGAAAGCCG Acctccccct 000160 000161 cctcctccac ctcctcctcc tcctcctcct cctcctcctc ctcTCACCCA GGATCACTTC CGAAACCACT TGGCCTTCAG 000240 000241 CCCCTGCCTC GGCCAGAGGT TTCATTTTTA ACTGAATATT TACGAAAGCT GAAAGCGTGC GAGGGGGGTG GGGTGGAAAT 000320 000321 AGCGGCTGCT TCTTTTCCAA GGATTTATTT AATGGGGATG TGTTCAAGGC AAGACCGAAT TCAGAAGGAT ATCGACGTCG 000400 000401 TGATCCAGAA GTCCAGAGCT GAGGACTGCC TGTTTGCAGG ACAACTGTGC AGACTACAAA GCTTCGGAAA ACCGGAGAGG 000480 000481 CTGAGTCGAC TAATCGTGTT GTTCCACGTT AGAAACGCTT GCATTGCCTG ACTCTGAAAC CAGAAGGGCG GCCGAATGGC 000560 000561 CTTCACCCTC CGTTAACCCT CGCCTGCTTC AGAAGCCAGT GCCTCTGGAA ATGCCTGGAT CTGCGACCCC AGCCTGAGCC 000640 000641 TAGTAGGGCC CAAGGGAAGC TGAACGCCCC GACGGCTCTC ATGGGCACCG GCAACAGTTT TCCGTTTGTG CCTACTCCAC 000720 000721 CTGCTGTCTT TGTTGGGTCA GCGAACATCG CCTCCCTCTA CCGCTCAATC AGCAAAAGGG ACCGCCCTTG AGGACCTCAC 000800 000801 CCGCCGCTCA CTCCCCTCCC AACTTCGCGG GCATCGCCTC CGGTCGCCTC TTCCGAAGGC CTAACGAGCA TGTTAGCTGC 000880 000881 GAACGGAGGT GAGGAGGCTC CGCTGACTGA CCGGTGCCCA TGTCCAGGGC ACGCACAAAC GCCATGACTT GGCTTGGCCT 000960 000961 CTCTCTTAGT TATTCACAGC TCAGCCCGAT AGGCACCTCC GGGGCGGCGA CGGCAAAGAG GGTGCCCTTA TTAAGTGCAG 001040 001041 CTCCACGGGG ACTGGCCTCT CTGCACGGCT GTGTACACCT GAGCGAGACG CTCAGTCGCT CTCTAAAGCC GCTTCT |
Predicted Small Protein
Name | NONHSAT006214_smProtein_680:790 |
Length | 37 |
Molecular weight | 3838.3516 |
Aromaticity | 0.111111111111 |
Instability index | 59.0638888889 |
Isoelectric point | 10.9032592773 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0237943826179 |
Amino acid sequence | MGTGNSFPFVPTPPAVFVGSANIASLYRSISKRDRP |
Secondary structure | LLLLLLLLLLLLLLLEEEELHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |