NONHSAT006855

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT006855

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1987 nt

Genomic location

chr1-:156374050..156386731

Exon number

3

Exons

156374050..156374393,156384446..156384545,156385189..156386731

Genome context

Sequence
000001 AAACGGTAAT TCTTAGATTG CAGAAAGGTT AAAGGCTACA GTTTGGAAAG ACTGATAGCA TATGATTTGT TTCAGAATGT 000080
000081 AAAAAGGGCA GCTCTCTGGC ATGTTCCTGA CTGAGGATCT CATAACATTT AACTTGAGGA ACTTCCTCCT TTTCCAGCTT 000160
000161 TGGGAGTCAA GGTGAGACTC CTGGGGACCT AGGTAGGAAG TATCTGAAGA CTTGGGAGAG GAGGCACAGT CCTTGGGAAG 000240
000241 CCTGATAAAG GGAAGAGGTT GGAGTCCGCG TGGCAGAATG GCCGTTGTTT TCTTTCTCCT TAATGGATAT TAAGACTTAT 000320
000321 TGGTAACAGC ACTTAGGATG GGTAAACTGA CTTACATAGA TAAATACAGA ATGTGTAAAT GATAATTTCA AGTTTATGCC 000400
000401 ATTAAGCTCC TGGATTCTAA GTAACTAAAA ACACAGTTTA TTAAATTAAA GGACAAGTTA GGTAGTGGCT ATAATTAACA 000480
000481 AATCCTATAG AGACCTGCCT ATCAGCATGT AGACTTGTCT TCATAATTGA GTGACTTTAA GAAGGGATGT CTTCTCTCCC 000560
000561 TTCGCCTCAC AAACCAACAT CCCCCCAGTC CCCAGTGCGA TTCCTAAGGT TGGTAACCCA CCAGAGTCAC ACAGGCCCCT 000640
000641 ATGTCTGAAA GTCTTTCTTG AAGTCTGCAT GTTCAAGGTT TGAAAGTTGG AATCTGGTTA TTTATTTTTT CACCTTCCTT 000720
000721 CACTCCAATG TTCTGGGTAT GGATTGACCT TCCCACCTCC CTTCCTTTGC TATTGGGACC TCAGAGGTCT TGAGGGGTGA 000800
000801 GTATGTCTCA TCCAGAGACA GGGTGTGCTG ACTTCCCTAG GAGATCATGA GTTTAGGTTA ATGCTTTAAA ATCACTGGAG 000880
000881 AAGCAGACAA AACTATAAAA ACATTCTTGG GGCTTTGAGG AGAATGAGGA GCAGAGTTAT GGAAGGAAGG GTGGGTGGGT 000960
000961 GCATATTTAG ATAGGAGAGA GAAGGGGAAA GGGGGAACCC CCTCCTTGCC ACCCAGGCTC TCCCAGGGCC AAAGTGACAC 001040
001041 CCCCTCCTCC TCCTGCCCTA ATCCCCCCAT TAAGGCAGCT CTGAGTTTGT TATGACAGGG GCTGAAGGCT GCTGAATTGC 001120
001121 TGTTTGCTGT GTCTGCTAAT TGGACTGAAG GGTTGGAGTC TGGACACTGA AAGGGACCAT TGTTGCTGTT TACCTTCTAC 001200
001201 AGCCGCCTCC CTGGGGACCC TCTGGGTAAA GGGGAGCAGC AGCACCCCCT TAGGGTCATT GCACCCATTT CCTGCACAAG 001280
001281 GGACTGCGGT GGGGAGACAG TTTGTCTCAT TGCCTTGGGG TGGTTTGAGC TTCTACAGCA CAGAGGAGAC AAGCCAACAC 001360
001361 CTGAGCCAGT CTCTTCTCCA GGCCAGGCCT AGGGGCCATC CAGGAGCTCC CAGGAAAGAG GATTTACATG CTTGTCTTTC 001440
001441 TCCTTTTTAT TCATTCCCTT CTTCTTTAGG GATCTTTGCT TTGCCTCTTC CTCCAGCTAA TCAGGCTTCA CCCCTGCACC 001520
001521 TTTTCTGACC TGCTTTCTTC TAGCTTCTCA CCTGGGGCGG GTGGGTTCTG CACCACCCTC CCACCCTCCT TCCTCCGTGT 001600
001601 GGACGATAGA GCCACATCCA GCACCACGGA CAGCTCCCGG GCGACCAAAA AGAAGAATGT ACTTCATCTG GTTGGGCTGG 001680
001681 ATTCCCTCTG ATAAGCCTTC CCAGTTGACT GAAAGATGAG GCTAGGCTCT AGCAAGTTGA AGTCAAACCA GCTCCTTCAA 001760
001761 GAAGCTTTGA GCAGAATGAA GTGGGGAGGA CCCAGCTTCC AGCCCAGGAA GCCCACTGTA CCTGGAGCCA TCTGGGATAA 001840
001841 GACTTTGACC CATGACTCCC ATATCCACAG CCTGTCCATC CTAGCCCATC CCAGTTTATC CTGTATCATT TGAGCTGGGA 001920
001921 TTCCCACATC CTCTGAGTTG GAAGTCCCAT CTCAAGTCTT CAATAAAGAC TCTTGAATAT TGAATCA
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Predicted Small Protein

Name NONHSAT006855_smProtein_1715:1912
Length 66
Molecular weight 7203.3356
Aromaticity 0.0461538461538
Instability index 43.8923076923
Isoelectric point 10.182434082
Runs 9
Runs residual 0.0118269230769
Runs probability 0.0484896661367
Amino acid sequence MRLGSSKLKSNQLLQEALSRMKWGGPSFQPRKPTVPGAIWDKTLTHDSHIHSLSILAHPS
LSCII
Secondary structure LLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEELLLLLLLLLLLLLEEEELLL
LLEEL
PRMN -
PiMo -