NONHSAT006855
Revision as of 19:43, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006855 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1987 nt |
Genomic location |
chr1-:156374050..156386731 |
Exon number |
3 |
Exons |
156374050..156374393,156384446..156384545,156385189..156386731 |
Genome context |
|
Sequence |
000001 AAACGGTAAT TCTTAGATTG CAGAAAGGTT AAAGGCTACA GTTTGGAAAG ACTGATAGCA TATGATTTGT TTCAGAATGT 000080
000081 AAAAAGGGCA GCTCTCTGGC ATGTTCCTGA CTGAGGATCT CATAACATTT AACTTGAGGA ACTTCCTCCT TTTCCAGCTT 000160 000161 TGGGAGTCAA GGTGAGACTC CTGGGGACCT AGGTAGGAAG TATCTGAAGA CTTGGGAGAG GAGGCACAGT CCTTGGGAAG 000240 000241 CCTGATAAAG GGAAGAGGTT GGAGTCCGCG TGGCAGAATG GCCGTTGTTT TCTTTCTCCT TAATGGATAT TAAGACTTAT 000320 000321 TGGTAACAGC ACTTAGGATG GGTAAACTGA CTTACATAGA TAAATACAGA ATGTGTAAAT GATAATTTCA AGTTTATGCC 000400 000401 ATTAAGCTCC TGGATTCTAA GTAACTAAAA ACACAGTTTA TTAAATTAAA GGACAAGTTA GGTAGTGGCT ATAATTAACA 000480 000481 AATCCTATAG AGACCTGCCT ATCAGCATGT AGACTTGTCT TCATAATTGA GTGACTTTAA GAAGGGATGT CTTCTCTCCC 000560 000561 TTCGCCTCAC AAACCAACAT CCCCCCAGTC CCCAGTGCGA TTCCTAAGGT TGGTAACCCA CCAGAGTCAC ACAGGCCCCT 000640 000641 ATGTCTGAAA GTCTTTCTTG AAGTCTGCAT GTTCAAGGTT TGAAAGTTGG AATCTGGTTA TTTATTTTTT CACCTTCCTT 000720 000721 CACTCCAATG TTCTGGGTAT GGATTGACCT TCCCACCTCC CTTCCTTTGC TATTGGGACC TCAGAGGTCT TGAGGGGTGA 000800 000801 GTATGTCTCA TCCAGAGACA GGGTGTGCTG ACTTCCCTAG GAGATCATGA GTTTAGGTTA ATGCTTTAAA ATCACTGGAG 000880 000881 AAGCAGACAA AACTATAAAA ACATTCTTGG GGCTTTGAGG AGAATGAGGA GCAGAGTTAT GGAAGGAAGG GTGGGTGGGT 000960 000961 GCATATTTAG ATAGGAGAGA GAAGGGGAAA GGGGGAACCC CCTCCTTGCC ACCCAGGCTC TCCCAGGGCC AAAGTGACAC 001040 001041 CCCCTCCTCC TCCTGCCCTA ATCCCCCCAT TAAGGCAGCT CTGAGTTTGT TATGACAGGG GCTGAAGGCT GCTGAATTGC 001120 001121 TGTTTGCTGT GTCTGCTAAT TGGACTGAAG GGTTGGAGTC TGGACACTGA AAGGGACCAT TGTTGCTGTT TACCTTCTAC 001200 001201 AGCCGCCTCC CTGGGGACCC TCTGGGTAAA GGGGAGCAGC AGCACCCCCT TAGGGTCATT GCACCCATTT CCTGCACAAG 001280 001281 GGACTGCGGT GGGGAGACAG TTTGTCTCAT TGCCTTGGGG TGGTTTGAGC TTCTACAGCA CAGAGGAGAC AAGCCAACAC 001360 001361 CTGAGCCAGT CTCTTCTCCA GGCCAGGCCT AGGGGCCATC CAGGAGCTCC CAGGAAAGAG GATTTACATG CTTGTCTTTC 001440 001441 TCCTTTTTAT TCATTCCCTT CTTCTTTAGG GATCTTTGCT TTGCCTCTTC CTCCAGCTAA TCAGGCTTCA CCCCTGCACC 001520 001521 TTTTCTGACC TGCTTTCTTC TAGCTTCTCA CCTGGGGCGG GTGGGTTCTG CACCACCCTC CCACCCTCCT TCCTCCGTGT 001600 001601 GGACGATAGA GCCACATCCA GCACCACGGA CAGCTCCCGG GCGACCAAAA AGAAGAATGT ACTTCATCTG GTTGGGCTGG 001680 001681 ATTCCCTCTG ATAAGCCTTC CCAGTTGACT GAAAGATGAG GCTAGGCTCT AGCAAGTTGA AGTCAAACCA GCTCCTTCAA 001760 001761 GAAGCTTTGA GCAGAATGAA GTGGGGAGGA CCCAGCTTCC AGCCCAGGAA GCCCACTGTA CCTGGAGCCA TCTGGGATAA 001840 001841 GACTTTGACC CATGACTCCC ATATCCACAG CCTGTCCATC CTAGCCCATC CCAGTTTATC CTGTATCATT TGAGCTGGGA 001920 001921 TTCCCACATC CTCTGAGTTG GAAGTCCCAT CTCAAGTCTT CAATAAAGAC TCTTGAATAT TGAATCA |
Predicted Small Protein
Name | NONHSAT006855_smProtein_1715:1912 |
Length | 66 |
Molecular weight | 7203.3356 |
Aromaticity | 0.0461538461538 |
Instability index | 43.8923076923 |
Isoelectric point | 10.182434082 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0484896661367 |
Amino acid sequence | MRLGSSKLKSNQLLQEALSRMKWGGPSFQPRKPTVPGAIWDKTLTHDSHIHSLSILAHPS LSCII |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEELLLLLLLLLLLLLEEEELLL LLEEL |
PRMN | - |
PiMo | - |