NONHSAT006883
Revision as of 19:43, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006883 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1867 nt |
Genomic location |
chr1+:156479646..156481486 |
Exon number |
1 |
Exons |
156479646..156481486 |
Genome context |
|
Sequence |
000001 CTTTTCACAG CTGCTCCTTG CGCTGCTGGG GGAGGTTGCT GAGGTATGGG GAAGAGGTAC GCTGTCGCTA AGCAACAAGA 000080
000081 GGCTGTGCAC CTGGAGGTCC TAGGAGGAGA CCCTGGCACC ATCGGTATGG GGGAGGCAGG GAGACAGTAA AGGGTTGATC 000160 000161 AAGCTCAAGG CTCCCTCTCC CATCCTCCCC AAGACAGTTA CAGAGGAGGG ATGTACCCAT CGCTCAAGAA GCCTGTTGAA 000240 000241 TTGGCTCACA ATCCTCCAGA AGGCTGCGAT TGTGCATGCA AACCTGTGTG ACATTCCATA GACTGAGAGT TGGAGAGGGC 000320 000321 AGGGGCTAGG GCATGAAAGA CAAGGGTGAG CATCTTTCAC ATCAATCTTG GAGGAAGGTC GAGGACTTGC CTGTCTGCTA 000400 000401 AAAGGTAGGA ACTTCCATGG AAGTGTAAAG GTCTGAGGGC GGAAACTTAG TAGGGAGGCG ACAGAATGGG AAGGGAAGCC 000480 000481 GGTTGGACCC TGGGGCAGCC TCCCAGTCAC AGAGGCTACC AAGGAGCCTA CACAGAAGGG AGGTGGCAGG GCAGCAGGGG 000560 000561 CCCCACACCC ATCAGCCATC TGCTGGAATT CTCAGTGTCC TCAAAGCTGA AGTGCTGCAC TGTATGCCGT TATTTTTCTT 000640 000641 CTCTTTTATT ATTGTTTTTT GGTGGACTGG AGTTTGAACG AGGTAACGAT CAAGAGGGAA AGACTCGTCG ATTGACCCTG 000720 000721 TCACCCGCCT CACTGCATCT CTAACAGGCC TGTAGCCCTG TAAACGTGAG GAGCAGCTCA GGGTTGACAG AGGGCCATTG 000800 000801 CCTCCCTTTT TCTGTCACTT CCTCCATTGC CTCAACCCCT GTCCAGAAGA GCGCACCTTC ATTCAACAAG CATGGATCAA 000880 000881 GCACTCGTGA CGTGCCAGCC AGGGCGCTGG GGAAATGATG AGGGTTGGGT TCCGTGGTGG CCGACACCCA GCCCCTCCTC 000960 000961 CACAGTGCCT GTCTCCTTGC TGGTATCTTG GCAGGCTCCC GTTCTCCCAT CAGACGCTAC ACTCACACAT GCTGCACATA 001040 001041 CTGGTGAATA GCTTCTTGCA GTCCATCCTG GCACGGTCCC CAAATTCCGC AGGGAACAGG GTGTGCTTCA GCCCTCTCCC 001120 001121 TCTCTCACTA AGGGCTAGGA AGTTTTGAGT CTTCCATCTC ACACACCCCA GAGGCTGCGT TGCCGGGAAG ACACAGGGGC 001200 001201 AATGTGAGGC CTTCTTATTC CTGACCCACG AGAACGATGC CAAGTTGGGG ACAAGAAGGG TAGAGGCTTG TTTTGCTTTC 001280 001281 ATTCCTGCTT TATGCCAGGC ACTCTGAAAG GCATTGTGTA CACTATTTTC ATCATCAGAC AATAGCCCAT AATACTTTGT 001360 001361 CTGACATCTG ACAAAGAACG ATCAGCCTCA TTTTACAGAT GGTGAAACTG AAGGAGCATG TTCATGTTCA TACAGCACAA 001440 001441 AGTGGCTCTG GGATTTCAAC CCATAGAGGA GTGTTAGAAT AATACCCTCA CAAATTCAAT GTTGAAAGTG CTAATGAAGT 001520 001521 CCGGGCGCGG TGCCTCATGC CTGTAATCCC AGCACTTTGG GAGGCCAAGG CGGGCAGATC ACCTGAGGTC AAGAGTTTGA 001600 001601 GACCAGCCTG ACCAACATGG AGAAACCCCG TCTCTACTAA AAATACAAAA TTATCCGGGC GTGGTAGCAC ATGCCTGTAG 001680 001681 TCCCAGCTAC TTGGGAGGCT GAGGCAGGAG AATTGCTTGA ACTTGGGAGG TGGAGGTTGC AGTGAGCTGA GATTGCGCCA 001760 001761 CTGCACTCCA GCCTGGGCGA CAGAGCGAGA CTCCATCTCA AAAAATAAAT AAATAAATAA TAAATAAAAA AAAAAAAAAA 001840 001841 AAAAAAAAAA TAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT006883_smProtein_914:1147 |
Length | 78 |
Molecular weight | 8693.1802 |
Aromaticity | 0.0909090909091 |
Instability index | 78.5441558442 |
Isoelectric point | 11.7866821289 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0428449840215 |
Amino acid sequence | MMRVGFRGGRHPAPPPQCLSPCWYLGRLPFSHQTLHSHMLHILVNSFLQSILARSPNSAG NRVCFSPLPLSLRARKF |
Secondary structure | LEEEEELLLLLLLLLLLLLLLHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LEEEELLLLLLLLEELL |
PRMN | - |
PiMo | - |