NONHSAT006988
Revision as of 19:43, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006988 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1141 nt |
Genomic location |
chr1+:158484575..158485715 |
Exon number |
1 |
Exons |
158484575..158485715 |
Genome context |
|
Sequence |
000001 AATACAATGA ATAGATATGA TCACTAGGGC ATTTACTACT ACAGGTTCTA CCCCCTTTTC TGATTTATTG TTTCTCAATC 000080
000081 CATAGTGTAA GTAACTCCTG CATCTTTTAG GGCAAACTAT CTTCTTTCAT TTTTGTTCTC TGTAGGTCAA TCTCTGGGAC 000160 000161 CAAGTCAATC AAGCTAACTT CTCTGTCAGA GTTCCTGCTT CTTGAGTTCT CCAGCCTTGA AGAAATCCAG CAGATCCTTT 000240 000241 TTCTGTCTGC TTGTGGCTAT ATCTGATTGT TCTGAGTGGA AATATCACCA CTGTCACTGT CATCCGCCTG GATCAAAGCC 000320 000321 TCCACATACC TGTATACTTA TTCCTAGGGA TCCTCTCCAT TTCTGGGACA TGCTATACCT TTGTCATTCT GCCCAAGATG 000400 000401 CTCATAGATC TGTTGTCTTT GCTCAGAACA ATCTCATTTA TTAACTGCCA CTCCAGTGTT CTTCTTTCTG GGTTTTGCTG 000480 000481 TCACTAATTT CATGTTCCTG GGCATGACAG TTTATGATTC CTATGTTGCC ATCTGCCATC CACTTCACTA CCCTGTCCTT 000560 000561 ACGAGCTGGC AGATATGTAA ACAACTGGCA GCAACGTGTG CTGTGATTGT TTTTTTTTGT TTGTTTGTTT TCACTGATAG 000640 000641 GCTCCTTCTT AGATTTTCAG CTGCTTTTCT GTGGCCCAAA CAAGATCAAC CACTACTTCT GTGACATCTC ACTGCTTATT 000720 000721 CAGCTTGCCT GTACTGATAC CTACATCAGG GAGCTAGTCA TCTTCATTGG TGGAATTCTA GCACTTACGG TTCCTCTGAT 000800 000801 TTTATTTGCA TCTCCTATGG CTTCATTGTT CACACCATCC TGAGGATCCC ATATGTGAAA GCAAGCAAAA AGCCATCTCT 000880 000881 ACTTGTGCCT CCCATCTTAT TATGGTCGTT GTCCATTATG GCTGTGCCTC CTTTGTCAAC CTGTGACCAT CAGCCAAATA 000960 000961 ATCATCCAGC AAATAACCAT CTAGCAAGAA CAGGCTGGTG ACAGTGACCT TACACAGTTG TGACTCCGTT GTTGAATCCA 001040 001041 TGGTATATAG CTTCAAGAAT AAGAACGTTC AGATGGCCAT TTGGAAAGTG ATTTGCCAAG GAGGATTTCC TCCTAAAGCT 001120 001121 ATAATAAGAT TATTTCACAT C |
Predicted Small Protein
Name | NONHSAT006988_smProtein_491:703 |
Length | 71 |
Molecular weight | 8115.6855 |
Aromaticity | 0.171428571429 |
Instability index | 48.3928571429 |
Isoelectric point | 7.68695068359 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0672829692437 |
Amino acid sequence | MFLGMTVYDSYVAICHPLHYPVLTSWQICKQLAATCAVIVFFCLFVFTDRLLLRFSAAFL WPKQDQPLLL |
Secondary structure | LEEEEEEELLLEEEELLLLLLLLLHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHL LLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiii iiiiiiiiii |