NONHSAT007058
Revision as of 19:44, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007058 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
578 nt |
Genomic location |
chr1-:160278720..160280312 |
Exon number |
2 |
Exons |
160278720..160278966,160279982..160280312 |
Genome context |
|
Sequence |
000001 GTGTTAACCC TACCTACCTT CTGTTGAATA ATTTGACTTC TACTATGGCT TACTTTTTAA AACTGTTTGT TCAAAGCTGA 000080
000081 GCTAGGGAAG TTGCCAAGCC TTAAAGGAAG AGAATACAAT ATTTATTCAT TTTATTCCTG ATTATAAAAG TGATGAGTAT 000160 000161 ATAGTGTAAA GATTGGATAA GTAGGAGGTG TGGGGGTGAT TCCTTTCTTC CTTCTATTCT TATGCCTCTT CCCTGTTTTC 000240 000241 TCCTTTTTCT ATATATATCT CTAGTGGTTC CAAGTTTCCA GTATTCAATA TGTCATACAA TCCAGCAGAA AATGCAGTCC 000320 000321 TGCTTTGTAC AAGAGCTAGC AATCTAGAGA ATAGTACCTA TGACCTGTAC ACCATCCCTA AAGATGCTGA CTCCCAGAAT 000400 000401 CCTGATGGTA AGTGTTCTTT TTGTCTACCC CACTCTGCTT CCAGCTCTCC TCACCCGCAT CATAACTCCT CTTCAAGTTT 000480 000481 TTCACATTCC ATCCCCAAGC CATGGCCACA TCACTCATGT CTGTTGGCAG GTGCTGCTGA CAATTGCATC AGAGGCGACC 000560 000561 ATGGTGTGAA ATATTCAT |
Predicted Small Protein
Name | NONHSAT007058_smProtein_359:568 |
Length | 70 |
Molecular weight | 7680.2983 |
Aromaticity | 0.0579710144928 |
Instability index | 59.9536231884 |
Isoelectric point | 8.88861083984 |
Runs | 10 |
Runs residual | 0.00559621179509 |
Runs probability | 0.0484013425189 |
Amino acid sequence | MTCTPSLKMLTPRILMVSVLFVYPTLLPALLTRIITPLQVFHIPSPSHGHITHVCWQVLL TIASEATMV |
Secondary structure | LLLLLLLLLLLLLEEEEEEEEELLLHHHHHHHHHHLLLLEEEELLLLLLEEEHHHHHHHH HHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooTTTTTTTTTTTTT TTTTTiiii |