NONHSAT007365
Revision as of 19:45, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007365 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1801 nt |
Genomic location |
chr1-:166636691..166658518 |
Exon number |
4 |
Exons |
166636691..166638205,166648655..166648798,166657992..166658066,166658452..166658518 |
Genome context |
|
Sequence |
000001 AATCACCTCA AGCCCATAAG CATAAATTTT GGTAGTTAAT TATCTCTAAA ATGATGAGAA TCATTAAGTC AATCTAAAAC 000080
000081 TCTTTGAAAT TTTTGCCTAG GCTATAATTA ATGGATGTGA ATGAAAAGGA AAAGGAGGGG ACAGCAAAAA TTTAAAGTAA 000160 000161 AATGTTATTA CAAAATAAAT GTATATAAAT CAGTAACTTT CCTAAAAACC CAAAGTAATC AGACAGAAAA TACAAAGGGA 000240 000241 AAATCTATTT TAGCAAATAA AAATGAATAA GTATAGACTT AAGTAGAGGT ATGATCAGAC AGGTGGTTTT AGGCTTATTT 000320 000321 TTTCCTTGAA AAAATGTACT TGACAGTCAG TTTACTGTAA TATTGCCCAA CAGGAACAAC GGAGGCATTG GACTCATTTC 000400 000401 TCTACAAAGA GAACTCTTTA CAGTTCAGAA TTTTGCTTAT AATGACAGAC CTAAATTAAT ACCAGTAATT ACATTATAAC 000480 000481 TTAACAGGAG GAAGATTATA GATGCTAAAA TGCAGCATAA CAAACAAAAT TAAAACAGAC AAAAAGGGGT TGAGAAGAGA 000560 000561 AACTTCCAAA GGGTAAAAAA GACACCACAA CTAAAAGAAT TTGGATTAAG AGAAGCCCCT GGAAAAAAGC ATTATGAAAG 000640 000641 TTGAGAGAAA AAAAAATCAT GCAAATGTGA TGTATATTAA AATGTTAAGG GATAGGCCGG CGCGGTGGCT CACGCCTGTA 000720 000721 ATCCCAGCAC TTTGGGAGGC CGAGGAGGGC GGATCATGAG ATCAGGAGAT AGAGACCACG GTGAAACCAC GTCTCTACTA 000800 000801 AAAATACAAA AAATTAGCCG GGCGTGGTGG CAGGCGCCTG TAGTCCCAGC TAATTGGGAG GCTGAGGCAG GAGAATGGCG 000880 000881 TGAAGCCGGA AGGCAGAGCT TGCAGTGAGC CGAGATTGCG CCGCTGCACT CCAGCCTGGA GAGACAGAGC GAGACTCCAT 000960 000961 CTCAAAAAAA CAAAAAAAAA ACAAAAAAAA AGAAAAAAGT TAAGGGTTAA AAACAAAAAG TATTAGAAAA ATATGTTGAA 001040 001041 TACTTAAGAG AAAAAAGGCT GCTTTTTTAA AAAAATGAAT TATACTTCAA GAAGACTTTT TTTTTACTTA TACTTTCTAT 001120 001121 TTTTATTATT ATACTTTAAG TTCTAGGGTA CATGTGCACA ATGTGCAGGT TTGATACATA GGTATACATA TTCCGTGTTG 001200 001201 GTGTGCTGCA CCCATTAACT CGTCATTTAC ATTAGGTATT TATCCTAATG CTATCCCTCC CCCAGCCCCC CACCCCCGAC 001280 001281 AGGCCCTGGT GTGTGATGTT CCTTGCCCTG TGTCCAAGTG TTCTCATTGA TCAATTCCCA CCTATGAGTG AGAACATGTG 001360 001361 GTGGTTGGTT TTCTGTCCTT GTGATAGTTT GCTGAGAATG ATGGTTTCCA GCTTCATCCA TGTCCCTGCA AAGTACATGA 001440 001441 ACTCATCCCT TTTTATGGCT GCATAGTATT CCATAGTGTA TATGTGCCAC ATTTTCTTAA TCCAGGCTAT CATTGATGGA 001520 001521 CATTTGGGTT GGTTCCAAGT CTTTGTTATT GTGAATAGTA CTGCAATAAA CATACATGTG CATGTGTCTT TATAGTAGCA 001600 001601 TGATTTATAA TCCTTTGGGT ATATACCCAG TAATGGGATT GCTGGGTCAA ATGGTATTTC TAGTTCTAGA TCCTTGAGGA 001680 001681 ATCACCACAC TGTCTTCCAC AATGGCTGAA CTAATTTACA CTCCCACCAA CAGTGTAAAA GCATTCCTAT TTCTCTACAT 001760 001761 CCTCTCTGGC ATCTGTTGTT TCCTGATTTT TTAATGGTAG C |
Predicted Small Protein
Name | NONHSAT007365_smProtein_1247:1465 |
Length | 73 |
Molecular weight | 8267.9241 |
Aromaticity | 0.125 |
Instability index | 68.275 |
Isoelectric point | 5.40972900391 |
Runs | 14 |
Runs residual | 0.0535279805353 |
Runs probability | 0.03081232493 |
Amino acid sequence | MLSLPQPPTPDRPWCVMFLALCPSVLIDQFPPMSENMWWLVFCPCDSLLRMMVSSFIHVP AKYMNSSLFMAA |
Secondary structure | LLLLLLLLLLLLHHHHHHHHLLLLHHHLLLLLLLLLLEEEEELLLHHHHHHHHHHHEELL HHHLLLHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTT Tiiiiiiiiiii |