NONHSAT007742

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT007742

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3629 nt

Genomic location

chr1-:174964447..174968075

Exon number

1

Exons

174964447..174968075

Genome context

Sequence
000001 ATAGATCGTC CAAGGCAGCA ATTAGAATCA GCAACTCGGA GAGGAAAAAA AGCTGTTAGC GGAATGGAGG CTGACCATTA 000080
000081 TCTGTAGTAA AGAATCGGAA GTACAGTACa aaaataaatt accgaaacgc aacatgcgtg aatttcacac aaaaaaatga 000160
000161 agttgaggga aagaagccag acatggaaga gttcatattg cgtggttcca tttaaaaact agcccatggt gttaatgagc 000240
000241 atagtgggga ggacaatgac atgaaagagc caccaggggg cttttgaggt tcaggtaatg tttcttgatt tggacactga 000320
000321 ttatagatag gtgggttcac tttagaaatc tcattgagtt gtaaacgtat atttatgtac gtagtttttt ctgtagatta 000400
000401 tgcttAAGGC CCGGCGAAGG GGAATTTGCC CAGGTAATGG AAATAttaca ccgatacata gaattgtcaa agttcatggg 000480
000481 atgaactcct aagagctgtg tattttatcg tataaatttt TTTAAGTGTC CAACCAATAG CCTGGAATTA TTAAGTACAT 000560
000561 AATTAAATAA AAACAAATAT CCCATGGACC TAATGcagtg aacagttacc tcgttctctt aattgctcag gctaaggact 000640
000641 catacctgag tcttctatct caggccttac atcttatata acaagcctta ctggcttaat cttcaaaata tgtagcgaat 000720
000721 ttaacgagtt ctcacaacct ctgcttctac cacctgacgg ggtttgggac atgctaccca aaaatatggc acctagacat 000800
000801 attgaatact ttgaactgaa ggaatttgag aaagaacata tgcaggaatg tctctaactt tcttgcacct ttctgctctg 000880
000881 aagcaggacg taataccctc atgtgagaat tgccctgtct atacctggaa taaaagtaac atctttatct ctgaaaacac 000960
000961 agggacgtag agacgaatat gaacatcagg ccttgctaag tttcccccag tttattaccc ttagatcaca gtcttttagc 001040
001041 cccatcacat tttcccacaa ttctccattc ttcttcaaac ctactctaaa caacactaag gttaactatt tattcgggtc 001120
001121 ttcatttctt tatgaagttt ccatgttatg taaaactaac attaatattt atgcttttct cttgttaatt tgtcttttgt 001200
001201 tacaggatcc ccagccagtg agcctaaaat gggtagaagg aaaagatatt tcttacccta cgcacccagg tccaagtcat 001280
001281 cattattttg tctgaaattt atcttcctaa ctgatttctc tgcttcccca ttgtgcctta agagttagtt ttccacagag 001360
001361 cagctcgaga tatcttttca gatcattata tccctttgct taaaaacctc taacagcttc ctattaggct tagaataaag 001440
001441 tacaaactcc ttaatgtgaa cttgagtgtt ttacgtatct tatctcacct ttatgagctt catgtcagaa cccatctctc 001520
001521 accactcttc cttccccgct ccctgattta aacagtctgg cactttactt attcattgaa cccactgggt ttgctcttgc 001600
001601 ctccaagtct gtacccagct ttctctctac ctgtaatcct cttcctctag gtcatcacac agatcgtttc ttcactctat 001680
001681 ttaggtcttt cagaagtaac actaagggag gcttttccag acAATAttat gcaaatataa atggacatgt gacaaatact 001760
001761 ttattcgact tattagttac tgagagtgta tttgagtagc caggtattta taggcaattt aacaatgtaa tgttagtata 001840
001841 aggtggcaag gttagatata aacctgttaa tgtctcacag ggtaataaac tataactttt ggtgttatct gttccactgg 001920
001921 aaaggaagta gggatttgca ttcttactgg acaaaaatct acaagttaat gtatagattc agtataggac ttttaaatca 002000
002001 atagtgaacg atgaaatgaa caaagtacaa tcccctagtc cttggtttga cactgaaagg acatgccact cacctttttg 002080
002081 ccttgtttcc aaagtttgga ataattttcc tttCAAAATG AAATTATTTC TCATTCAGTT GTcctattgc aggcagcctt 002160
002161 tactgcttcc cccagttaat gtacctgtca agcttactca tgatttccta actgccaaat tcaatggata tttttaattt 002240
002241 tttttttgct atgactcatA CTGTTCCCTT CGGGCTTGTC AGCAGATAAA TGACCTTCTG GGGACTGTGC aaaatatgga 002320
002321 atgcttaatg aatttgtgtg ttattcttgt gcaggggaca caacagtctt ctctgtagat tacagtttta gtgtatgtgc 002400
002401 tgttgaagtg agcacTTCTG AGTAATTTTG ATTGTTTTAC TTTTTATGTA AAATTTCACA TTGTTTAAAA CACCAGATGG 002480
002481 Gggccaggca tggtggctca tgcctgcaat cccagcactt tgggaggctg aggcgagtgg attgcttggg ctcaggagtt 002560
002561 tgagaccagc cttgccatgt ggcaaaacct tgtctctata aaaaatagaa atatcagcca ggcatggtgg tgtatgcctg 002640
002641 tagtcccagc tacttgggag gctgaggtgg gaggcacttg agcctgggag gtggaggttg aagtgagctg agatcacgcc 002720
002721 actgcactcc agcctgggtg acagagcaag accatctcag aaaacaaaca aacaaaaaaT ACCACATGGC CAAATGAAAG 002800
002801 ATGTCTGTGG TCTGAATTTG GGCCAAAAGC TGTAATCTTA CAGTCTTTGA TTATTTTTTA ATACATGCTG AATTCCAAGA 002880
002881 GGAGCTGACA AATCTCTTGA GATTTCACTT GGGTTCCATG GATTCCCAGC ACAAAATGCA AATGCAAATG AGATATGATT 002960
002961 GGGATTCTCT GCACACTATC TCCACTTTCA TAAGTGCCTC TGAAGTTTAG TTTGAATTTT ATAGTATCTC CTACCTTGCT 003040
003041 GTACCTTAAA GGACTAACAG CAGCTACCTG ACCCAGGATT AGCCAGTCAT ATTTTTTCCA GAATTTGTAA TTGGAACAAT 003120
003121 TGAGATGGTA GTCTTCTGCT GGTAGTTTGA AGAGAGGATA TGTAAACTTG GTAGCTGTGT ACTTAGAAGC AGAGAAAGCC 003200
003201 TGTTTTCAGA GAGAAGAATG AAGCAGGTAA GTCATCTGGA AGGACAAGCA GAAGCACAAT TTTGGGAACA GTTGCTTTCA 003280
003281 GAGTCCTGAT GGCATTCCAG CCCCTTGTCC TAGTGCCAGT TCAGGCCCAA GTGTTTGGCC TTTGGGACCT ATGATACAGA 003360
003361 TATCCTATTT CCTTTTAATT AATTGCCTCT TAAAATTACT ATTATTAAGC TAGCTTGCAA GGGTTTCTGT TACGTGGAAT 003440
003441 CAAGGAACCT CAGTAGAGAG GAAAATGAAG CACTTTGTGG TGGTGCTGCA CAGGGTATCA TTTTGCAGGG TATATACTGT 003520
003521 GTGTTTTCTA CGTTGACTGG AGTCTGGGGT CAGGTGTAAG AAGTGTTACA TAAACATTGG GTTCAAATGA GTCAGAATAA 003600
003601 AGTCAACTAA AAAAATAAAA AAGACATAC
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Predicted Small Protein

Name NONHSAT007742_smProtein_2015:2236
Length 74
Molecular weight 8607.0807
Aromaticity 0.164383561644
Instability index 67.9219178082
Isoelectric point 9.45562744141
Runs 9
Runs residual 0.0208572691118
Runs probability 0.0442992011619
Amino acid sequence MNKVQSPSPWFDTERTCHSPFCLVSKVWNNFPFKMKLFLIQLSYCRQPLLLPPVNVPVKL
THDFLTAKFNGYF
Secondary structure LLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLLLLEEE
LLHHHHHHHLLLL
PRMN -
PiMo -