NONHSAT007742
Revision as of 19:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007742 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3629 nt |
Genomic location |
chr1-:174964447..174968075 |
Exon number |
1 |
Exons |
174964447..174968075 |
Genome context |
|
Sequence |
000001 ATAGATCGTC CAAGGCAGCA ATTAGAATCA GCAACTCGGA GAGGAAAAAA AGCTGTTAGC GGAATGGAGG CTGACCATTA 000080
000081 TCTGTAGTAA AGAATCGGAA GTACAGTACa aaaataaatt accgaaacgc aacatgcgtg aatttcacac aaaaaaatga 000160 000161 agttgaggga aagaagccag acatggaaga gttcatattg cgtggttcca tttaaaaact agcccatggt gttaatgagc 000240 000241 atagtgggga ggacaatgac atgaaagagc caccaggggg cttttgaggt tcaggtaatg tttcttgatt tggacactga 000320 000321 ttatagatag gtgggttcac tttagaaatc tcattgagtt gtaaacgtat atttatgtac gtagtttttt ctgtagatta 000400 000401 tgcttAAGGC CCGGCGAAGG GGAATTTGCC CAGGTAATGG AAATAttaca ccgatacata gaattgtcaa agttcatggg 000480 000481 atgaactcct aagagctgtg tattttatcg tataaatttt TTTAAGTGTC CAACCAATAG CCTGGAATTA TTAAGTACAT 000560 000561 AATTAAATAA AAACAAATAT CCCATGGACC TAATGcagtg aacagttacc tcgttctctt aattgctcag gctaaggact 000640 000641 catacctgag tcttctatct caggccttac atcttatata acaagcctta ctggcttaat cttcaaaata tgtagcgaat 000720 000721 ttaacgagtt ctcacaacct ctgcttctac cacctgacgg ggtttgggac atgctaccca aaaatatggc acctagacat 000800 000801 attgaatact ttgaactgaa ggaatttgag aaagaacata tgcaggaatg tctctaactt tcttgcacct ttctgctctg 000880 000881 aagcaggacg taataccctc atgtgagaat tgccctgtct atacctggaa taaaagtaac atctttatct ctgaaaacac 000960 000961 agggacgtag agacgaatat gaacatcagg ccttgctaag tttcccccag tttattaccc ttagatcaca gtcttttagc 001040 001041 cccatcacat tttcccacaa ttctccattc ttcttcaaac ctactctaaa caacactaag gttaactatt tattcgggtc 001120 001121 ttcatttctt tatgaagttt ccatgttatg taaaactaac attaatattt atgcttttct cttgttaatt tgtcttttgt 001200 001201 tacaggatcc ccagccagtg agcctaaaat gggtagaagg aaaagatatt tcttacccta cgcacccagg tccaagtcat 001280 001281 cattattttg tctgaaattt atcttcctaa ctgatttctc tgcttcccca ttgtgcctta agagttagtt ttccacagag 001360 001361 cagctcgaga tatcttttca gatcattata tccctttgct taaaaacctc taacagcttc ctattaggct tagaataaag 001440 001441 tacaaactcc ttaatgtgaa cttgagtgtt ttacgtatct tatctcacct ttatgagctt catgtcagaa cccatctctc 001520 001521 accactcttc cttccccgct ccctgattta aacagtctgg cactttactt attcattgaa cccactgggt ttgctcttgc 001600 001601 ctccaagtct gtacccagct ttctctctac ctgtaatcct cttcctctag gtcatcacac agatcgtttc ttcactctat 001680 001681 ttaggtcttt cagaagtaac actaagggag gcttttccag acAATAttat gcaaatataa atggacatgt gacaaatact 001760 001761 ttattcgact tattagttac tgagagtgta tttgagtagc caggtattta taggcaattt aacaatgtaa tgttagtata 001840 001841 aggtggcaag gttagatata aacctgttaa tgtctcacag ggtaataaac tataactttt ggtgttatct gttccactgg 001920 001921 aaaggaagta gggatttgca ttcttactgg acaaaaatct acaagttaat gtatagattc agtataggac ttttaaatca 002000 002001 atagtgaacg atgaaatgaa caaagtacaa tcccctagtc cttggtttga cactgaaagg acatgccact cacctttttg 002080 002081 ccttgtttcc aaagtttgga ataattttcc tttCAAAATG AAATTATTTC TCATTCAGTT GTcctattgc aggcagcctt 002160 002161 tactgcttcc cccagttaat gtacctgtca agcttactca tgatttccta actgccaaat tcaatggata tttttaattt 002240 002241 tttttttgct atgactcatA CTGTTCCCTT CGGGCTTGTC AGCAGATAAA TGACCTTCTG GGGACTGTGC aaaatatgga 002320 002321 atgcttaatg aatttgtgtg ttattcttgt gcaggggaca caacagtctt ctctgtagat tacagtttta gtgtatgtgc 002400 002401 tgttgaagtg agcacTTCTG AGTAATTTTG ATTGTTTTAC TTTTTATGTA AAATTTCACA TTGTTTAAAA CACCAGATGG 002480 002481 Gggccaggca tggtggctca tgcctgcaat cccagcactt tgggaggctg aggcgagtgg attgcttggg ctcaggagtt 002560 002561 tgagaccagc cttgccatgt ggcaaaacct tgtctctata aaaaatagaa atatcagcca ggcatggtgg tgtatgcctg 002640 002641 tagtcccagc tacttgggag gctgaggtgg gaggcacttg agcctgggag gtggaggttg aagtgagctg agatcacgcc 002720 002721 actgcactcc agcctgggtg acagagcaag accatctcag aaaacaaaca aacaaaaaaT ACCACATGGC CAAATGAAAG 002800 002801 ATGTCTGTGG TCTGAATTTG GGCCAAAAGC TGTAATCTTA CAGTCTTTGA TTATTTTTTA ATACATGCTG AATTCCAAGA 002880 002881 GGAGCTGACA AATCTCTTGA GATTTCACTT GGGTTCCATG GATTCCCAGC ACAAAATGCA AATGCAAATG AGATATGATT 002960 002961 GGGATTCTCT GCACACTATC TCCACTTTCA TAAGTGCCTC TGAAGTTTAG TTTGAATTTT ATAGTATCTC CTACCTTGCT 003040 003041 GTACCTTAAA GGACTAACAG CAGCTACCTG ACCCAGGATT AGCCAGTCAT ATTTTTTCCA GAATTTGTAA TTGGAACAAT 003120 003121 TGAGATGGTA GTCTTCTGCT GGTAGTTTGA AGAGAGGATA TGTAAACTTG GTAGCTGTGT ACTTAGAAGC AGAGAAAGCC 003200 003201 TGTTTTCAGA GAGAAGAATG AAGCAGGTAA GTCATCTGGA AGGACAAGCA GAAGCACAAT TTTGGGAACA GTTGCTTTCA 003280 003281 GAGTCCTGAT GGCATTCCAG CCCCTTGTCC TAGTGCCAGT TCAGGCCCAA GTGTTTGGCC TTTGGGACCT ATGATACAGA 003360 003361 TATCCTATTT CCTTTTAATT AATTGCCTCT TAAAATTACT ATTATTAAGC TAGCTTGCAA GGGTTTCTGT TACGTGGAAT 003440 003441 CAAGGAACCT CAGTAGAGAG GAAAATGAAG CACTTTGTGG TGGTGCTGCA CAGGGTATCA TTTTGCAGGG TATATACTGT 003520 003521 GTGTTTTCTA CGTTGACTGG AGTCTGGGGT CAGGTGTAAG AAGTGTTACA TAAACATTGG GTTCAAATGA GTCAGAATAA 003600 003601 AGTCAACTAA AAAAATAAAA AAGACATAC |
Predicted Small Protein
Name | NONHSAT007742_smProtein_2015:2236 |
Length | 74 |
Molecular weight | 8607.0807 |
Aromaticity | 0.164383561644 |
Instability index | 67.9219178082 |
Isoelectric point | 9.45562744141 |
Runs | 9 |
Runs residual | 0.0208572691118 |
Runs probability | 0.0442992011619 |
Amino acid sequence | MNKVQSPSPWFDTERTCHSPFCLVSKVWNNFPFKMKLFLIQLSYCRQPLLLPPVNVPVKL THDFLTAKFNGYF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLLLLEEE LLHHHHHHHLLLL |
PRMN | - |
PiMo | - |