NONHSAT008712

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT008712

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2011 nt

Genomic location

chr1+:200835354..200837364

Exon number

1

Exons

200835354..200837364

Genome context

Sequence
000001 caaaaaaaaa aaagaaTTGG TTTCACTGAT CAGTAGCAGG ATCACAGCAC TGTAGAGGGA CCCTCTACCA ATGCCAAGGG 000080
000081 AATGCTGCCA AATTCCTCCT GCAAATACTT GGAAATTTAC ACTAACTCTC TGTGAAATCA CTGAAAAGTA ATGGCAAATC 000160
000161 ATAGGTTAGA AGCTCCTGTG GGCAGAATAA TTGCTACAAA GAGAAAACGT TACTTTCTTT CCAAACAAAT TCTGGGGCCA 000240
000241 TTTTTATATT GGGGATGTCC CTATTGCTTG TCTTTTAAGT TTCTGATGGT TTTTTTTTTA CCTTTAAAAA ACGTTCGAGC 000320
000321 TACAGGAACC TGCAGTGGAA GAAAGGAGTC TCACTTTCCT TGAAAGCTAC ACTCTTCTCC TCCAGCCTCC CCTCCCTTCC 000400
000401 CTGACCCCCT CCCCCATGTC CCCTAAGAGG CATCAATGAT GTCCGGGGTA GATGGGGGGC CCTGGGACAA TCACACAGCT 000480
000481 GCAGGCCACA AGGCTTTCAC ATTGAGTCAT CTCCTTAGCA GTGTGGGCTG AAGCCGAGTC TCATGTCTAA CTCAGATGAT 000560
000561 GCCCTTTCCC AGCTACCCCG TATTTAGTAC CTGAAAGTTT CTGAAGTAAA TGAACATCTG AAACATTCTG CAGGGCCTCT 000640
000641 GGCATCCAGG GTGGGGCTCC TCATCTGGTG TGTGCCAGCC CTCCCTTAGA TGTTGAGGGT GCAGGGTAGG GGCAAGAGCT 000720
000721 ATTACTGTCT TCTGTCCTCT AATACCCTGT CCCTACCACC CTCCCCGCCC CCCGCCCCCC ACCCCACTCA CACACACGGC 000800
000801 CTCAGGGCTA TGTGGTCTAT GGGAAACCTC ATCTTGGTAG CCAGTCAGTA ATAGTGAATA AAATAGAGGA CTCCCCATTC 000880
000881 CCAGTTCAGT GTTTATCGAG AGAGGTTGTA AAAACAAAGA GATGTGGCTT TGCAAGATTT TCCTCACACT CAGGACTCAA 000960
000961 GTTACTGTTA ACCTCTCCGT CATCCGCAAC TGACTTGGCA TAAGGCCACC TGTCTGTGCT TGGGTCCTGT CAGCAGTTTC 001040
001041 TCTGCAGCAT CCAGACTGTC ACCTTGTAGA AATCACCATT AGGATAATAC CAGGCACCAG ACACTGTGGT GGTCAAATCT 001120
001121 TGAAGAGTCA AATCTTGGGA GTCTCTCTTT ATAGATTCCC AATCCAATCC CCAAAACATT TACTTACCAC CCACTATGTG 001200
001201 GAAAGAAAGC ACTGTGACCT GGAGGGTAGG AGAAGCAGCG CAAGCAGCTG AGTCTAGCAG CAGGACCACC AGAAACTAGA 001280
001281 GCCATTCTTC ACGATGCTGC CAGCCAGGGA ACGGAGTGAG CCCATGAGCT CCGACCCAGC ATGGGCAGCA Ccttccacaa 001360
001361 agggtgcctc atttgatctt cacaacaccc ctatcgggta gatactatca tgcctatttt aagatgtgga aactggagcc 001440
001441 caagatcaca cagctatcaa gttataaagc tgacatttaa cctggactct gacCACTAAT AATCTGATCT GCGTGTTCAC 001520
001521 TGATCAGAAA CAGACAAAAT GACATATAAG AAATTGATAT Tggccgggca cagtggctca cacttgtaat cccagcattt 001600
001601 tgggaggcca aggtgagagg atcgcttgaa gccaggaatt tgagatcagc ctgggcaata taatgaaact gtgtctctac 001680
001681 aaaaggtaaa aaataacatt agccaggcat ggtgctgtgc acctgtagtc ccagcttctc aggaggctga tgcaggagga 001760
001761 ttgcctgagc tgaagaattt gaggctgcag tgagctatga tcacactggg ctacactgca gcctgggcaa cagaacaagc 001840
001841 ccctgtctat taaaaaaaaa aaaaaagaaa tgcatataat aaaaaaaaGA AATGCATATA ATAAATTCTA TGTCACAACA 001920
001921 CAGAGCAAGG ttttaaaaat atatatttta aatttaataa atGATGTTAG GAAAGCTGGA TAGAAATATG AAAACATCGA 002000
002001 TTACACACCA G
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Predicted Small Protein

Name NONHSAT008712_smProtein_689:850
Length 54
Molecular weight 5770.6919
Aromaticity 0.0566037735849
Instability index 57.341509434
Isoelectric point 10.2951049805
Runs 9
Runs residual 0.00954901058444
Runs probability 0.0416494926299
Amino acid sequence MLRVQGRGKSYYCLLSSNTLSLPPSPPPAPHPTHTHGLRAMWSMGNLILVASQ
Secondary structure LEEEELLLLEEEEEELLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLEEEEELL
PRMN -
PiMo -