NONHSAT008712
Revision as of 19:50, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008712 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2011 nt |
Genomic location |
chr1+:200835354..200837364 |
Exon number |
1 |
Exons |
200835354..200837364 |
Genome context |
|
Sequence |
000001 caaaaaaaaa aaagaaTTGG TTTCACTGAT CAGTAGCAGG ATCACAGCAC TGTAGAGGGA CCCTCTACCA ATGCCAAGGG 000080
000081 AATGCTGCCA AATTCCTCCT GCAAATACTT GGAAATTTAC ACTAACTCTC TGTGAAATCA CTGAAAAGTA ATGGCAAATC 000160 000161 ATAGGTTAGA AGCTCCTGTG GGCAGAATAA TTGCTACAAA GAGAAAACGT TACTTTCTTT CCAAACAAAT TCTGGGGCCA 000240 000241 TTTTTATATT GGGGATGTCC CTATTGCTTG TCTTTTAAGT TTCTGATGGT TTTTTTTTTA CCTTTAAAAA ACGTTCGAGC 000320 000321 TACAGGAACC TGCAGTGGAA GAAAGGAGTC TCACTTTCCT TGAAAGCTAC ACTCTTCTCC TCCAGCCTCC CCTCCCTTCC 000400 000401 CTGACCCCCT CCCCCATGTC CCCTAAGAGG CATCAATGAT GTCCGGGGTA GATGGGGGGC CCTGGGACAA TCACACAGCT 000480 000481 GCAGGCCACA AGGCTTTCAC ATTGAGTCAT CTCCTTAGCA GTGTGGGCTG AAGCCGAGTC TCATGTCTAA CTCAGATGAT 000560 000561 GCCCTTTCCC AGCTACCCCG TATTTAGTAC CTGAAAGTTT CTGAAGTAAA TGAACATCTG AAACATTCTG CAGGGCCTCT 000640 000641 GGCATCCAGG GTGGGGCTCC TCATCTGGTG TGTGCCAGCC CTCCCTTAGA TGTTGAGGGT GCAGGGTAGG GGCAAGAGCT 000720 000721 ATTACTGTCT TCTGTCCTCT AATACCCTGT CCCTACCACC CTCCCCGCCC CCCGCCCCCC ACCCCACTCA CACACACGGC 000800 000801 CTCAGGGCTA TGTGGTCTAT GGGAAACCTC ATCTTGGTAG CCAGTCAGTA ATAGTGAATA AAATAGAGGA CTCCCCATTC 000880 000881 CCAGTTCAGT GTTTATCGAG AGAGGTTGTA AAAACAAAGA GATGTGGCTT TGCAAGATTT TCCTCACACT CAGGACTCAA 000960 000961 GTTACTGTTA ACCTCTCCGT CATCCGCAAC TGACTTGGCA TAAGGCCACC TGTCTGTGCT TGGGTCCTGT CAGCAGTTTC 001040 001041 TCTGCAGCAT CCAGACTGTC ACCTTGTAGA AATCACCATT AGGATAATAC CAGGCACCAG ACACTGTGGT GGTCAAATCT 001120 001121 TGAAGAGTCA AATCTTGGGA GTCTCTCTTT ATAGATTCCC AATCCAATCC CCAAAACATT TACTTACCAC CCACTATGTG 001200 001201 GAAAGAAAGC ACTGTGACCT GGAGGGTAGG AGAAGCAGCG CAAGCAGCTG AGTCTAGCAG CAGGACCACC AGAAACTAGA 001280 001281 GCCATTCTTC ACGATGCTGC CAGCCAGGGA ACGGAGTGAG CCCATGAGCT CCGACCCAGC ATGGGCAGCA Ccttccacaa 001360 001361 agggtgcctc atttgatctt cacaacaccc ctatcgggta gatactatca tgcctatttt aagatgtgga aactggagcc 001440 001441 caagatcaca cagctatcaa gttataaagc tgacatttaa cctggactct gacCACTAAT AATCTGATCT GCGTGTTCAC 001520 001521 TGATCAGAAA CAGACAAAAT GACATATAAG AAATTGATAT Tggccgggca cagtggctca cacttgtaat cccagcattt 001600 001601 tgggaggcca aggtgagagg atcgcttgaa gccaggaatt tgagatcagc ctgggcaata taatgaaact gtgtctctac 001680 001681 aaaaggtaaa aaataacatt agccaggcat ggtgctgtgc acctgtagtc ccagcttctc aggaggctga tgcaggagga 001760 001761 ttgcctgagc tgaagaattt gaggctgcag tgagctatga tcacactggg ctacactgca gcctgggcaa cagaacaagc 001840 001841 ccctgtctat taaaaaaaaa aaaaaagaaa tgcatataat aaaaaaaaGA AATGCATATA ATAAATTCTA TGTCACAACA 001920 001921 CAGAGCAAGG ttttaaaaat atatatttta aatttaataa atGATGTTAG GAAAGCTGGA TAGAAATATG AAAACATCGA 002000 002001 TTACACACCA G |
Predicted Small Protein
Name | NONHSAT008712_smProtein_689:850 |
Length | 54 |
Molecular weight | 5770.6919 |
Aromaticity | 0.0566037735849 |
Instability index | 57.341509434 |
Isoelectric point | 10.2951049805 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0416494926299 |
Amino acid sequence | MLRVQGRGKSYYCLLSSNTLSLPPSPPPAPHPTHTHGLRAMWSMGNLILVASQ |
Secondary structure | LEEEELLLLEEEEEELLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLEEEEELL |
PRMN | - |
PiMo | - |