NONHSAT009518
Revision as of 19:54, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009518 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1813 nt |
Genomic location |
chr1-:218517554..218519366 |
Exon number |
1 |
Exons |
218517554..218519366 |
Genome context |
|
Sequence |
000001 CCGCGGGGAG GAGGGTGCGC TTCGCAGGGC GCTCGGTACT CGGTCGGGTG CCGCAGGGGC CGCAGAGGCT GCTGAGGCGG 000080
000081 CGCGGATCCT GCTCTGGGAG CTGCGCTCCG TGGCCTACAC CCTGGCGGGC GCGCGCTGAC CCGCTTGGTT ACTCCACGTT 000160 000161 GCTGCCGCCG CCGCTTGCAA ACGCTTCCAG CCTCCAGCTC CCTCCTTCTC CTGCTCCTCC TTCTCTTGCT CCAAACGCCA 000240 000241 ACCCAGCCAC AGACGATCAG CCGTCGCGGT TGCGTTCACC CCCTGCGGAT CACAACGGCA GCCCTTGCGA CACCCTGGCT 000320 000321 GGGGAGTTTT ATTCCTGAGG GGGTTGCGCA GGGGCTCCCT TGGACTCCCA CCCTTTCCCA ACCTCTGCTG GCTTCTCCCC 000400 000401 AACGTGGAAT TGCTCGCTTA GGGTAGGTAG GCACTTGCCA CCCTAAAATA GATCCTCTCT GTCTCCTCCT GTCTGCAGCC 000480 000481 GGGCAGCCCC TCAGTTTGTT CCTGGATGAC TCCCTAGACC GTCAGGCTAA TATTCTCCAT CCCCCTCCCC TGCCTCTTTC 000560 000561 ACTTGCGCTC TCGCTCTGCT GTCTCTTTCT CTCTTTCTCT TTCTATCTCT ATCTCAATCT GTCTTTCTCT TGTCAGGAGC 000640 000641 TTCTGGAGCT CCGCTCGGAG CGAACCTTCT GCTGCCAGCA GATAACATCA CGATCTTGCC GGGGAGGGGA GATTTATAAG 000720 000721 TTCTCTCTGA ACCACGTGTC TGCCTTCAAC AAAGTGACGT GCTAGGATTA CAGTCAGAAG TCCTCTCGTT ACTTAGACCA 000800 000801 CGAGCTCTCC CCGAACCGTT GAGGGAGTGT GGAAATGAGG ACCGCTGTGG GTAAGGGAGG AAGGAGGTGG AATGTGCGCC 000880 000881 CTGACAACAG TGATTTACGG TATTTACTTT CCAGTCATTT TGGACAGGTC TGTTGAAGGA AGGACAATCA AGTCTCCCGT 000960 000961 TTTTACTTAG TGTAGCTCAG TCACAGCCTC CCAAGCTGAA TCACTTGCTC TAGAAGGGAA GGCTTCCCTC CTGTATTATG 001040 001041 TGTGCACACG CACCCCTATG GGAGGGAGCA CTAGTCTACT CAGGGCCAGG CCAGTACTGA AGACATACCT TCCAATCTTT 001120 001121 TAAATTCATG TCCTACCTCT TATTTTCTGG GATACCTTAG CAGGTTGCCA TCCCAGAATT TATTTTGTTA GTTTGTTGTT 001200 001201 TACAATGTAC CCCTCTGTTT GTGAACTGCT GGAAAACAGA GATCCATCAA TTTTACCTAA AGAATAAGGT ATACTTGTTT 001280 001281 GTTTTACTGA TTTGAATGAA TGGTCACCTT TATAATTTGC TGCCTAAGCC ACTTCTTGTA TGGCTTTCTT CTTCACCTTC 001360 001361 TTGCTAGGCT AAACATTATC AACCAACTTC ATTCTTTCCA TAGCATTAAT CCAGGAAGCT GGAATTTTAA GTGTTTGATG 001440 001441 TCTACTGTTC TACACTACTC ATAACTTGAC ATTTTCAATT TCAACTAAGT CTAAATTAGA TGAATACAAG AATAACTCTT 001520 001521 ACCACTGTTC CACCTTCCCT TTTTCTTTTA TTTTACCTTT AGTTACTCAA AGTCAACATT TTCATTTCGG CATGACTCTG 001600 001601 CAGCCATACT GACCAGACAG ATGATTTAAA CTGGAAACTC TGTTGAATGT ACTCCCAAAC CCAAGATCTC TATACTGTTC 001680 001681 TCTACTTCAG ATGTTCCTGA GTTCAGAAAA GTCACAAAGA ACTTTCTATC ACTTTTGGAA TTTATACTTC AGTTGTGTAT 001760 001761 GGGGCCTAGG TTATTAGTAG AGCACTGAAT AAATAAAATA ATAATAGCTA ACA |
Predicted Small Protein
Name | NONHSAT009518_smProtein_1295:1366 |
Length | 24 |
Molecular weight | 2570.0368 |
Aromaticity | 0.0869565217391 |
Instability index | 71.8913043478 |
Isoelectric point | 7.97698974609 |
Runs | 5 |
Runs residual | 0.0103519668737 |
Runs probability | 0.028899487723 |
Amino acid sequence | MNGHLYNLLPKPLLVWLSSSPSC |
Secondary structure | LLLHHHHLLLLLLEEEELLLLLL |
PRMN | - |
PiMo | - |