NONHSAT009613
Revision as of 19:54, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009613 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
807 nt |
Genomic location |
chr1+:220800592..220801398 |
Exon number |
1 |
Exons |
220800592..220801398 |
Genome context |
|
Sequence |
000001 GAGGAAGAGT TCTCTGACTC TGATGAGGTG AGAGAGGGTG GCCACAAGAA CTCTTCCAAC TTCAAAAAAG CCAAGAGAGT 000080
000081 CAAAACAGGA TGGAAAAGAG AAAGACCTAG ATGAGAAGAG CAAAGTCACA GAAGAGGAGA AAACCAAGGA GGAGAAGCCA 000160 000161 GAAGCCAAAG GGGTCAAGGA GGAGGTCAGG TTGGCCTGAG CAGACCTCTC CAGCTCTGGC TTCTTGCCAA GTCCCCTGCC 000240 000241 TTTCTCCACC AACACCTCAG ATTTTATGCT TTCTATTTCT CTGTGTATTT ATAGGAAAGT TTATTAAATA TAAATATCCC 000320 000321 CAGGGACTAG ACAGAAACCA AGGCCCTGAG CCCAGGGCAG CTATGCTGGG TGAACTCTTC TAGGAGCTGC CTTGCCACCC 000400 000401 ATCCTTCCAT CCTTCCCCAG TTCTTAACTT TGAACCATAA AGAGTACCAG GTTTGGGTGA AAGGGATACT TTCATGCAAC 000480 000481 CATAAGACAA AATCCTGAAA ATGCCAAATG CCTGCTTAGT AGCTTTGGAA AGGTACCCTT ATTGAACATT CTAGAAGGGG 000560 000561 TGGCCAGGTC TTCAAGGGTC TCCCGTTCTT TTCAGGCTGC TAATGTAACA TCAGCCATTT TTAGATTGGC TCTGTCCTCA 000640 000641 TACCTTCCCA GTGGCCTCAG GTGAGCCAAG AAACTCACAC TGCCTGCCCT TTGTCTTCCC CTAATTCTGC AGGTGGAGGT 000720 000721 TGGTGGTCTA GTTTCCTTTT TGAGATACCG TTTTCATTTT TGAGACCTTT GTAATAAAAT GGTACATTTC TATACAAAAA 000800 000801 AAAATAA |
Predicted Small Protein
Name | NONHSAT009613_smProtein_110:382 |
Length | 91 |
Molecular weight | 10375.1564 |
Aromaticity | 0.0888888888889 |
Instability index | 95.6211111111 |
Isoelectric point | 11.1950073242 |
Runs | 10 |
Runs residual | 0.0287477954145 |
Runs probability | 0.0548666313373 |
Amino acid sequence | MRRAKSQKRRKPRRRSQKPKGSRRRSGWPEQTSPALASCQVPCLSPPTPQILCFLFLCVF IGKFIKYKYPQGLDRNQGPEPRAAMLGELF |
Secondary structure | LLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLHHHHHHHHHHHH HHHEEEEELLLLLLLLLLLLHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTToooooooooooooooooooooooooo |