NONHSAT009902
Revision as of 19:55, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009902 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2299 nt |
Genomic location |
chr1-:226920314..226922612 |
Exon number |
1 |
Exons |
226920314..226922612 |
Genome context |
|
Sequence |
000001 TGATGTATGA ATTAAATGAA AACCATACTT TGAGCTAAGC AGATGGTTTC TTCAGTATCA TAGGCACCTG AGTGTTATCT 000080
000081 CCGGAGTAGG TACCTCCTAA TGGATGTACA TGTCAGTTGG TACAGGTTGA CATTTCAGGT ATGTTTTCAC GTGCCTCTGG 000160 000161 TTTGGGTCAT CACACTGACA TCTTGTTCTG GTTATGGCAG TAGACAGGAG TTTATTTCTA TTACATGGTT AATCGAACTT 000240 000241 GTAGGCTGCT TTTACTCTTA GGAGGATCAG AGTATCTTAC AGAAGACATA GGAGTTGAAG CTAGCACTTC TGAAAAGGTC 000320 000321 TGGGCTTTCT CTTAGCTTTT CCAGAGAGCA TGGGGAATTT CCTAGTTCAG TGTGCCAGGG GTGGTTGTGC TATATTGGGG 000400 000401 GAAAGTCTGC ATTTTATTAT AGTAGGTAGC CTTCCGATTT CATCTTGAAT ATCAAATACT CTTCACTGTA CCTCAATAAC 000480 000481 TTTCTCCACC ACGACTGGGA GCTTTATGTT TCTACTCTGC ATTCTTCACT AAGGTATTTT GGACCACAAA ACATACTCCT 000560 000561 CTCTGATTCC CTATTCACGA ATCACAGTCT GGATTTTTGA AGACCAGGCA TTCCTTTTCA TGAAACTCTG CTTTTTGCTG 000640 000641 ATGATCTGGA GGCAAATGTG TATGCAAAAT CGCCCCAATC AGCCTGGCAT TTTGTGGCTA GGACAGGGCC CCTGGGCATT 000720 000721 ATGCACCTGC TGTCAGGCAT AGGCGCACCA CCTTTAGAGG GGGAAGCGGT CCACCTGGAA GGGGATGGTG GTCAAGGGCA 000800 000801 GGTGGGAAAT ACTTCTTTCT GAAGGCATGG GCCAGATTTC TCTTTCTGCC CAGCAGTTAG AGGTCTACTG AATAAGAGAT 000880 000881 GGTCCCCCGT CCCATCCCTC CCAGTTGCTT TTGAACTCCT GAAGCATAGC TGAAACAGCC AAAGTCACTT TAACTTGTTC 000960 000961 CCTGACTGTC CATTCACCCT TTCTAGTGGT AGATTAGCAA CTTCTATTGG CTGGTTGTCA AAACAGTTTG TGTCCCGATG 001040 001041 TTTGAAAACG GCTCTTGTCT AGAAGAGAAT TAACAGGGAG ATCAATAACG ACAGGTGACT TTTTTTTCCA TTTGCCAGAA 001120 001121 CGATGCCATT TGAGAAACCA GAGGGTTAAG TGGTGTTTTT AAGTTAGTGA ACATATCCAG AGGTAGAAAC GAGGCCAGCC 001200 001201 TGTTGTCCAG TCTACCTCCC ACCTTTAAAC AGGTTTTCAG ACACCCGCAG AGCAGAGCCA GGGAAAAATC CCCTGCCGGC 001280 001281 TTTGCTCTCT GAATCACATG AGACTGGTGG GAAGTGGGGT GGGTGTGTGT GTGTGTGTGT AGGGGGGTAA GGGTGGGTAA 001360 001361 CCAACTGGAA ATTATGGGAT CCTAGGGACT TTTGAGCTTT GGTTGAGTGC TTGCACGATA AGCAAAGTTT TCTTCTTGTA 001440 001441 CAGATTGTTA CGCTGGAGCC TTATCTGTGA CACCCAAACA TCAGCTCATT GGGTCAAAAA TCACTTGATT ACCTGCAATA 001520 001521 GATATTTTGT CTACAGAAGG CCAGACATCT TGATGGAGTG AGTCTTTTGG CTGGGCCTTT CTGTGTTTGA TAGATAAAAG 001600 001601 CCCCACCAGC TCTGTCTGAG GTTCTACCAA ACTGATGTAG CATTCTCTTT TCTGGACTTT GCTGTGTCTG TCCAGCTACT 001680 001681 GCACAACGCT ATAGCTGCAC ACTCTCATGC TTGCTCACAC TTGCTTACAC TTGCCCTCAC ACATGCCCTC ACACATGCTC 001760 001761 ACACTTACCC TCCTATGCTC ACACAGGTTC CCCCTTGCTC ACCCCACTCA CACAGGTCTG AAATGGCATG TTCAGCGTTC 001840 001841 CAGTCACATA ACCAACCCCT GGCCCTCAGA CCCACACTAG ACACTGAGAT TGTTTCTGTG CTGCCCTACC TTCCCACAGA 001920 001921 GTTAAGCCTT TCGGGCCTCC TGTGGCGCTT TCTTCATCCT TGCTGAGGAA TGAGTGTGTA TGACTTGGTG TGCAGGCAGG 002000 002001 GGGTGACAGT ATATCTGCTT AGTAGGGATC AGACACTTGA AATTTGCTCA GAAATAGTTG CATTACACGC CCAGTGTGCA 002080 002081 ATGGCTGAAA TTCAGGCACA TTCATGCTTA CTGTTCTCTG AGATCTGAAC AAAATCAAAT TGCACTGAGC AAGGATAGTG 002160 002161 CTCAATCTTT TGTTCTTTCT GACAACTAAA AATTAACCAG CGGTTGTTTA CTTCCCTATA TAATTCTGTT TAAGAGAATC 002240 002241 TGGACCATTG AGACACCAGG CTTAAAATGT TGTATTAAGA TATAAAAGTA CCTTACTTT |
Predicted Small Protein
Name | NONHSAT009902_smProtein_1706:1879 |
Length | 58 |
Molecular weight | 6545.5463 |
Aromaticity | 0.0526315789474 |
Instability index | 48.001754386 |
Isoelectric point | 8.94683837891 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.043795896737 |
Amino acid sequence | MLAHTCLHLPSHMPSHMLTLTLLCSHRFPLAHPTHTGLKWHVQRSSHITNPWPSDPH |
Secondary structure | LLHHHLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |