NONHSAT010146
Revision as of 19:57, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010146 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1247 nt |
Genomic location |
chr1+:231006888..231011600 |
Exon number |
3 |
Exons |
231006888..231006971,231010288..231010901,231011052..231011600 |
Genome context |
|
Sequence |
000001 ggtgacttca gcaaaaaaca tgtatttctt acagttctgg aggctggaag tctgacatta ggatgccagt gtgatcagat 000080
000081 tctgCTTGGC TTGAAGGAGT ACTTTAGGAC TCAGAACAAC AGGATGAAGA CAGCAGCTAA AATAGAACAC ACCAGCAGAG 000160 000161 ACGTTCAGCT Ccttgagctg tgcttccgaa gctcaagcat ggcagagtgg ccttgttaaa tcagagttca gggtgccacc 000240 000241 ctgacagttt ctgattccgt aggtgcccag tagggaccaa gaatcctttt tttttttcct ttttcttttt aatagagtca 000320 000321 gggtcttgct atgttgccca catgggtctc aaattcaagc gatcctccca cctcgacctc ccaaagcact ggaattccag 000400 000401 gcataagcca ccgtgcctgg ccaagaacgt tttttttttt aacaagtttc taaatgatgc tggtctattg gtcctgggac 000480 000481 cacactttga aaTTGGTGgg ataggaggct gggatcttta tccattcact caactcccat tccccatggt tgaaagtttc 000560 000561 cctggggcat CCCTGGGAGG CCTGGGGGCT GACAAGATTC AAACGTTTTG GTGAAAAGCC CCAAGACAGT GAAGTGGGGT 000640 000641 GTGCTTGAAG TGGGGCACCG TCATCACCCA CCTACCCACC ACAGAGGTGA GCTAAAAGGT TACCAGACCG GAGCCTCCAG 000720 000721 CAATCCAGGA GCACAAACAA GGATGCCTTA AAACAAAACT TGTGTCAGGG TACCCTTCGC TGCCTCAGAG GAAATCAGAA 000800 000801 TGACCTGGTG GACAACTGTT CATAAGGACA AGAGCCAGTA TCACTGCCTT TGAGTCCCAG CCTCCTCAAA TCCATTTTCT 000880 000881 GCCCTGCACC ACCTCATCAT ATCCCGGATA TTGTTAGTGT CGTGTCATTT CATGACTCAG GAGCTGCGGG TGACTTTGGT 000960 000961 AAGAGCGGAG CGGTCGCTGT CTCATCTGTC ACCTCCTCCC TTCACCTCTG TGCAGCCAAC GTCCAGGGAG CCTGCCTCTT 001040 001041 GCTGTCCTTT TCAAAGCTTT CTGGGTCTCT CCTCTGTGCC TCTGATCCAG TCTTTCATGC TGCCCAGAAC ACTGTCTCTT 001120 001121 TCTCCCATGC CAGTGACATC CATTACTTTC TTCAAGGTCT GGCTCAAAAC CCAGCACTCA gccaggcacg gtggctcaca 001200 001201 cctgtaatcc caccactttg ggaggccaaa gcaggcagat cacgagg |
Predicted Small Protein
Name | NONHSAT010146_smProtein_341:613 |
Length | 91 |
Molecular weight | 10087.621 |
Aromaticity | 0.155555555556 |
Instability index | 47.9766666667 |
Isoelectric point | 9.30194091797 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0158031334502 |
Amino acid sequence | MGLKFKRSSHLDLPKHWNSRHKPPCLAKNVFFFNKFLNDAGLLVLGPHFEIGGIGGWDLY PFTQLPFPMVESFPGASLGGLGADKIQTFW |
Secondary structure | LLLEEEELLLLLLLLLLLLLLLLLHHHLLHHHHHHHHHHLLLEEELLLEEELLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |