NONHSAT010146

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT010146

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1247 nt

Genomic location

chr1+:231006888..231011600

Exon number

3

Exons

231006888..231006971,231010288..231010901,231011052..231011600

Genome context

Sequence
000001 ggtgacttca gcaaaaaaca tgtatttctt acagttctgg aggctggaag tctgacatta ggatgccagt gtgatcagat 000080
000081 tctgCTTGGC TTGAAGGAGT ACTTTAGGAC TCAGAACAAC AGGATGAAGA CAGCAGCTAA AATAGAACAC ACCAGCAGAG 000160
000161 ACGTTCAGCT Ccttgagctg tgcttccgaa gctcaagcat ggcagagtgg ccttgttaaa tcagagttca gggtgccacc 000240
000241 ctgacagttt ctgattccgt aggtgcccag tagggaccaa gaatcctttt tttttttcct ttttcttttt aatagagtca 000320
000321 gggtcttgct atgttgccca catgggtctc aaattcaagc gatcctccca cctcgacctc ccaaagcact ggaattccag 000400
000401 gcataagcca ccgtgcctgg ccaagaacgt tttttttttt aacaagtttc taaatgatgc tggtctattg gtcctgggac 000480
000481 cacactttga aaTTGGTGgg ataggaggct gggatcttta tccattcact caactcccat tccccatggt tgaaagtttc 000560
000561 cctggggcat CCCTGGGAGG CCTGGGGGCT GACAAGATTC AAACGTTTTG GTGAAAAGCC CCAAGACAGT GAAGTGGGGT 000640
000641 GTGCTTGAAG TGGGGCACCG TCATCACCCA CCTACCCACC ACAGAGGTGA GCTAAAAGGT TACCAGACCG GAGCCTCCAG 000720
000721 CAATCCAGGA GCACAAACAA GGATGCCTTA AAACAAAACT TGTGTCAGGG TACCCTTCGC TGCCTCAGAG GAAATCAGAA 000800
000801 TGACCTGGTG GACAACTGTT CATAAGGACA AGAGCCAGTA TCACTGCCTT TGAGTCCCAG CCTCCTCAAA TCCATTTTCT 000880
000881 GCCCTGCACC ACCTCATCAT ATCCCGGATA TTGTTAGTGT CGTGTCATTT CATGACTCAG GAGCTGCGGG TGACTTTGGT 000960
000961 AAGAGCGGAG CGGTCGCTGT CTCATCTGTC ACCTCCTCCC TTCACCTCTG TGCAGCCAAC GTCCAGGGAG CCTGCCTCTT 001040
001041 GCTGTCCTTT TCAAAGCTTT CTGGGTCTCT CCTCTGTGCC TCTGATCCAG TCTTTCATGC TGCCCAGAAC ACTGTCTCTT 001120
001121 TCTCCCATGC CAGTGACATC CATTACTTTC TTCAAGGTCT GGCTCAAAAC CCAGCACTCA gccaggcacg gtggctcaca 001200
001201 cctgtaatcc caccactttg ggaggccaaa gcaggcagat cacgagg
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Predicted Small Protein

Name NONHSAT010146_smProtein_341:613
Length 91
Molecular weight 10087.621
Aromaticity 0.155555555556
Instability index 47.9766666667
Isoelectric point 9.30194091797
Runs 13
Runs residual 0.00458553791887
Runs probability 0.0158031334502
Amino acid sequence MGLKFKRSSHLDLPKHWNSRHKPPCLAKNVFFFNKFLNDAGLLVLGPHFEIGGIGGWDLY
PFTQLPFPMVESFPGASLGGLGADKIQTFW
Secondary structure LLLEEEELLLLLLLLLLLLLLLLLHHHLLHHHHHHHHHHLLLEEELLLEEELLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLHHHHHLLL
PRMN -
PiMo -