NONHSAT010147
Revision as of 19:57, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010147 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1448 nt |
Genomic location |
chr1+:231008160..231011600 |
Exon number |
2 |
Exons |
231008160..231008294,231010288..231011600 |
Genome context |
|
Sequence |
000001 tatgaacaat catgcgcagc cccttcacca tgggatgccc tataccacct ggggactctg cagagagtcc tcaccagcaa 000080
000081 gaaagacctc accagatgca gccactcaaa tttggacttg tcagcctccg taattCTTGG CTTGAAGGAG TACTTTAGGA 000160 000161 CTCAGAACAA CAGGATGAAG ACAGCAGCTA AAATAGAACA CACCAGCAGA GACGTTCAGC TCcttgagct gtgcttccga 000240 000241 agctcaagca tggcagagtg gccttgttaa atcagagttc agggtgccac cctgacagtt tctgattccg taggtgccca 000320 000321 gtagggacca agaatccttt ttttttttcc tttttctttt taatagagtc agggtcttgc tatgttgccc acatgggtct 000400 000401 caaattcaag cgatcctccc acctcgacct cccaaagcac tggaattcca ggcataagcc accgtgcctg gccaagaacg 000480 000481 tttttttttt taacaagttt ctaaatgatg ctggtctatt ggtcctggga ccacactttg aaaTTGGTGg gataggaggc 000560 000561 tgggatcttt atccattcac tcaactccca ttccccatgg ttgaaagttt ccctggggca tCCCTGGGAG GCCTGGGGGC 000640 000641 TGACAAGATT CAAACGTTTT GGTGAAAAGC CCCAAGACAG TGAAGTGGGG TGTGCTTGAA GTGGGGCACC GTCATCACCC 000720 000721 ACCTACCCAC CACAGAGGTG AGCTAAAAGG TAAGGTGTGG CTCACAAAAA TCTTCTGCTA AATACCTATC TTTGCCTCCA 000800 000801 TTTCTTCCTC TTTAAGACGG GGGTAACTGT ACCAGTGTTC TAGGGTAACA TGTACCACCC TTGAATACAG TGTTGCTCCC 000880 000881 TGTCATGACT CACGGACAGG TTACCAGACC GGAGCCTCCA GCAATCCAGG AGCACAAACA AGGATGCCTT AAAACAAAAC 000960 000961 TTGTGTCAGG GTACCCTTCG CTGCCTCAGA GGAAATCAGA ATGACCTGGT GGACAACTGT TCATAAGGAC AAGAGCCAGT 001040 001041 ATCACTGCCT TTGAGTCCCA GCCTCCTCAA ATCCATTTTC TGCCCTGCAC CACCTCATCA TATCCCGGAT ATTGTTAGTG 001120 001121 TCGTGTCATT TCATGACTCA GGAGCTGCGG GTGACTTTGG TAAGAGCGGA GCGGTCGCTG TCTCATCTGT CACCTCCTCC 001200 001201 CTTCACCTCT GTGCAGCCAA CGTCCAGGGA GCCTGCCTCT TGCTGTCCTT TTCAAAGCTT TCTGGGTCTC TCCTCTGTGC 001280 001281 CTCTGATCCA GTCTTTCATG CTGCCCAGAA CACTGTCTCT TTCTCCCATG CCAGTGACAT CCATTACTTT CTTCAAGGTC 001360 001361 TGGCTCAAAA CCCAGCACTC Agccaggcac ggtggctcac acctgtaatc ccaccacttt gggaggccaa agcaggcaga 001440 001441 tcacgagg |
Predicted Small Protein
Name | NONHSAT010147_smProtein_392:664 |
Length | 91 |
Molecular weight | 10087.621 |
Aromaticity | 0.155555555556 |
Instability index | 47.9766666667 |
Isoelectric point | 9.30194091797 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0158031334502 |
Amino acid sequence | MGLKFKRSSHLDLPKHWNSRHKPPCLAKNVFFFNKFLNDAGLLVLGPHFEIGGIGGWDLY PFTQLPFPMVESFPGASLGGLGADKIQTFW |
Secondary structure | LLLEEEELLLLLLLLLLLLLLLLLHHHLLHHHHHHHHHHLLLEEELLLEEELLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |