NONHSAT010167
Revision as of 19:57, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT010167 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1972 nt |
Genomic location |
chr1-:231464488..231467017 |
Exon number |
2 |
Exons |
231464488..231465679,231466238..231467017 |
Genome context |
|
Sequence |
000001 TATCTATGGG ATGTATTTTT AGAAATTGCT CTGCCAAATT ACATTTTAAA TTTAAGCATT ACCAGTTGCT CATCAGGAGG 000080
000081 GTTATATCAT TTTTAAGTTC TCTCCAACAG TATAGGAAAA TACCTGTTTA CATGAATGCT TATAAACCTG TATTCATTCA 000160 000161 CTGTTTAATT AAGAGTAGCC TTGCCAAGCA CAGTGGCTCA AGTCTGTAAT CCCAACACTT TGGCAGGCTA AGGAGAGTGG 000240 000241 ATTGCTTGAG CCCAGGAGTT CGAGACCAGC CTGAATAGCA TAGGTAGACC CCCGTCTTTA CAAAAAATAG AAAAATTAGC 000320 000321 CGGGCGTGGT GGCGCACACC TGTAAGTCCC AGCTACTCGG GAGGCTGAGG CAGGAGGATT GCTTGAGCCC AGGAGGTTGA 000400 000401 GGCTGTAGTG AGCCATGACA GCACCACTGC ACTCTAGCCT GGGGGACAGA GCGAGACCCT GTCTCAAAAA AAAGTCATCT 000480 000481 TATTAGTAAT AATATTCATT GTTACTAATC TTCTCTGTGA AAAAATAGCT TCTAGGTTGT TCTCATTTTT GTTTGTTGGT 000560 000561 TGGTTTGTTT TTTGAGCCAG GATCTCACTG TATCGCCCAG GCTGGAGTGC GATGGTGCTG TCATGCCTCA TTGTAGCCTC 000640 000641 AACCTCCCTG GCCTGGCCCA AGGGATCCTC CTGCCTGGCT AATTTTTAAA TTTTTCTATA CATACAGGGC AGAGGTTGTG 000720 000721 GGGGGTGGTG TTCACTTTGT TGCCCAGGTT GATCTTGAAC TCCTGGGCTC AAGCAATCTT CCCATCTCTA CAAAAGTACA 000800 000801 AAAATTGGCT GGGCATGGTG GCGGGTGCCT GTGGTCCCAG CTACTTGGGA GGCTGAGGCG GAGGCTGCAG CGAGCCGAGA 000880 000881 TCGTGCCATT GCACTCCAGC CTGGGCGAGA CAGTGAGACT CCATCTCAAA AAAAAAATGT AAGTGATGAT GTCAGAATGC 000960 000961 AATTTCCCCA CAAATAATTA GCAAATTTTC ACAACAATTT TGAATCATCC TTTTCCCCCA CTGATTTGAA ATGCCACTGA 001040 001041 TATTTCTATT TCTGTTCAGT ACCAAGCTAT TTTGGTTAAC TGTAGTTTCG AAATTTAATA ACTGGTAGGG CTGGTCTCAT 001120 001121 TCTTCTGTCT CAGGTTTTTC CAAAGTACTC TCATCCCTTG GTCTGTGGGG AACCGGTCCT AGGACCTCTC TCATATACCA 001200 001201 AAATCCACAG ACGCTCAAGT CCCTGGTATA AAATGGTATA GAATTCACAT ATAACCTATG CACATCCTCC TGTATGTTTT 001280 001281 AAATCATCTC TAGATTACTT AGATGAGACT ATCTAATACT ATGTAAATAG TTATACTGTA TTGTTTAGGA AATAATGACA 001360 001361 TTTTTAAAAG TCTGTACATG TTCAGTACAG ACACAGTCTT TTTGAAGTAT TTTTTATCCC TCCTTTGTTG AATCCATGGA 001440 001441 TGCAGAACCC ATGGATATGA AGGGCTGACT ATATTCTCAC AGTTATATTC AAGTTGTATT TTGAATGATT TTATGACAAT 001520 001521 CTTTTACCAA AGGGCCAACT GTATTCTCAT GTTTATTATT CAAGTTGTAT GACAATTTCA TATCAGCCCC CCAGAGAGTT 001600 001601 GGCATTTGGA TTGAAATCAT ACTGAGTCTC TAGATTAATT TAGGGAGAAG TGACATCTTT ATAATTTTGA ATCTTCCTAT 001680 001681 CCATGTATAT GCGAGTGTTT TGTATTTCAG TGGCATTTTC AAATTTTCTT CAGGTAGGTC TCTTAGTGTT TATTCCAAAG 001760 001761 CATGTCATCT GTTAATGCTT TTGTGAATGA AATGTTTACC TCCATTATGT TTTCTGATTG TACATAGGAA ACATCCTGAT 001840 001841 TTGAATTACA AATATTGTAA CCAGTGCCTT ATCTAATTAT TTTATGAATT TTAATAGTTT TCTGGTTGTT CTTTGGAGTT 001920 001921 TTCAAGTGCA CAATTATATA AATTGCAAAT AAAGATCATT TTACCTCTTC TC |
Predicted Small Protein
Name | NONHSAT010167_smProtein_5:208 |
Length | 68 |
Molecular weight | 7848.3585 |
Aromaticity | 0.134328358209 |
Instability index | 43.5925373134 |
Isoelectric point | 10.2578735352 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0335629747394 |
Amino acid sequence | MGCIFRNCSAKLHFKFKHYQLLIRRVISFLSSLQQYRKIPVYMNAYKPVFIHCLIKSSLA KHSGSSL |
Secondary structure | LLEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEELLLLEEEEEEEHHHHH HLLLLLL |
PRMN | - |
PiMo | - |