NONHSAT010656

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT010656

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3265 nt

Genomic location

chr1-:245003545..245012214

Exon number

4

Exons

245003545..245006483,245008549..245008646,245009906..245010008,245012090..245012214

Genome context

Sequence
000001 CTTGAAAAGT AAAGCAAACA AATGTGTTGA TTTACATTTC ATCTCCTTTT CCTTAGTCTG TCCATGTGAA TGTGCTGTGT 000080
000081 GGAAGAGTTA AAGGGCCCAA CTAAATGTTC CAGTGATTCC AATAGCTATT TAGCTGGTAC CTACTGCTAT ATCACCTAGT 000160
000161 GTGACATTTC GGAATTAATG GAACAATGAA GGAAGCTGTA CACTGGAGGT TCCAGGTGGT CATGGAAGGT TTCCAGTTTA 000240
000241 TGCAAACTTC TGTGAAAATG AGCTTTGTTA TTGGTGAAGA CATTGGAAAT TTTACCAGCC AAAACAGAGT TTCTCTCTTA 000320
000321 TTCAGGATTG TTCAATTGCT GCTGCTGCCG TTGTGTTTTC TTTCAGGATC GAGGTGGGTA CCTTCATATA ATATCTTCTT 000400
000401 TTTAATTTCT TCTCTGGCAA TTCTTTCCTG GATTCTTTGC TTTGCATAAT TATACCTACA ATGAAACCTT AGAAGAAAAG 000480
000481 AATATGAATA AATTGTTAAT ATAAAGTCCT ACAGAAATTA ATTTATGAAA TTTCTCTAAA TCACACAAAA CTTAAATACA 000560
000561 GATGACTACT ACCCTGAGAC TGAAAAATAT GTTCTAATTT ATAGTGCTAT TTTTGGGCAG TTTTGGTGTC AGAATACCTA 000640
000641 TCAACACATT CTTTTTTTAT TAGGAAAAAA AGGATGTCTA CATAACAATT TGTAAAGTGA TAAAATCCAT TAGTTTTTAA 000720
000721 GTCTTCTGAT AGCATTGGCT ATTATAAGAA ACAAGTATTT GCTCTCGTTT TTAACGGGAT AATAATGCTA TGTCTACATA 000800
000801 AAAtgatttc taccacctta aatagctcac tgtagaaatt catgtataaa tggaaccata tagtacatac atatcatact 000880
000881 cttaggtctg gcaaatattt gaggttcatc catattttat attcactcat cagtagttGT AAACACATTC TTAAAGTAGC 000960
000961 ATTTTCAGAT ATGAATAAGC AGGGATGAAA TAAGTATTAG GGTAAGGGAA ATGGTTGAGG CTTTCCTAAG TGAAGTGTAA 001040
001041 AAACCACAGC TTTCTTTTTA ATGGGATGTC TAATATGCAT TTATCTGTTC AAGCATTTTA AGATTTCCAT GAAAATGTCC 001120
001121 TGAAAAATCA AGATTCTTCA TTGAGGGTGA GGATCTCCCA ATGGGAGACT GCTCTGAAAA GAGCATGTGC TTTTTGAATT 001200
001201 AGATAACCTA CTATAATCAT GGATGTTCTT GAATACTTAG CAAACATACC AGCATCCCAA AGTCACCAAG ATAAACCCTC 001280
001281 CTACTCCAAC ATCACATGAT CTTCTAATTC TACCTGTAAA AATAAGCATA ACAATTAATT AGAATATAAT TACGTTATAT 001360
001361 ACATTACTCC ACCTAGAAAA AAAAATAGTT CATTATGTAG AGAAATGCTT TTTTTAGTAC ATAGAGAAAT AAAAAATACA 001440
001441 GATACTCACT AGTGAACAAA AAATGTCCAA AGCCAGCCAC AACAGATCCT AATGAACCAT ACAATATTGA ATGCCGGGCG 001520
001521 CAGGGAGTAT TTTCAACATC TAAAAATCCT AGGAGCTTAA GGGACTAGAA TGAAAAAAAA GAACCTAGAT TGAGTAAGAA 001600
001601 AGTATTTCAT TTTGGGGTGC TTTGGCAAAA ATGACAATAC ACCATTTCTT TTCTTGTAGT TGAGGGTTTA AACTAGAGTA 001680
001681 TGTGCCACGT GACAACCTAA ATCAGCTTGC GTTGTCTTTG TCCACCTTTG GTATGCAGTC TGAATCTTTA AATCCGAAAA 001760
001761 CCTTACAAAT TGGACCGGAA AACCCTTAAG CAGTAGGGTA ACTTGGAGCT GTATCTTAAT TTGCTAATCA ACTGACTTGG 001840
001841 AAATAGGATA ATTCATTTTA TGAGCTCTTT AAATGAGTTT ATTTGGGAAT ATGCCTATCA TTGGAATTGA AAGCAGCATA 001920
001921 GCTTGCTTCA GTAACTCCAA TAATTTGGGA AGCAGAAATG GAAAAAGTAA TTTGAGTCAT GTTTGCTTAT GTAGTGCCGT 002000
002001 TTAAAATTCC CCTAGTAATT ACCTTTCATA TTTTATTAAC TAGGTTAACA TCAACTGTGG TTGTAAGAGT AAATGTTTCA 002080
002081 CCTTAAGATA AACATGGGCA ATATATTAAA CTCTAGTCTG TTTTCTTGCC TGTGAAGTGA GGCTGCACTT GATTATATTT 002160
002161 GATTCTTTGT TCGTAATACA TGGGAACGAC AGCTAAGTGT GGTGAAAAAC GCGGGGATCC AAAGAGCTGG ATTTTTATCT 002240
002241 CAGATCTGCC GCTAACTTTT GTATCCTATA GGCTACTTTT ATTTCTATGG TCTCAATCTA TAACATGAAT GGGTTGGGTT 002320
002321 AAATGACTGA AGTTCCTTCA AGTGCTAAAA TTCTTTTTCT ACAGTCTTCA TTGGATTTAT GTATTTCTTA TTCCTAATAT 002400
002401 GTTTAACTGG GATGTCTGTC ACTCTAGGGC GGCAAGACAG ACATTTAAAA GTAACAGTCA CACTGCTGAA CTGGCATTTC 002480
002481 TGTTAACACA AAAGTTTAGA AAACTCACGG TAACTGTTAC TTGATTTAAG TGTATATAAA ATTTTCAGTA AGGCTGCTTT 002560
002561 TAAAAGGAAC CACTGTCCAT TTAAAGGTTT CATAGTTATC TTCAATGGGT TAGTATTGTT TGGGGCAGGA CATTAAACTA 002640
002641 GAAGGGATTC TATAGGATGA GGTGATACCT AGAAGGTAAT ATATTGTAAG GCAAAAGAGA TTAGAAGAAA TGGGGAAAGG 002720
002721 ATAGTAAAAG GCAAGTCAGA TTAAAGGTTG AAACATGAAG ATATTCTCAA TTGTATTTCT GCCTATGTTT GCTTTTTTGG 002800
002801 CTCAAGCATC TGTTGGAAGA GACAAAATGT GACTTGGTTC ATAATAAAGC AAGAATTATT TACTCTCGGA TCATTCTATT 002880
002881 CCATTTTTTC CCTCTGTCTG GCCCCGTTCC CACCCGCATG CCTAACATAG GATTGCTTCA AAGCTTTGCA GTACAGTTCT 002960
002961 TCACATTACC AAGAGGTTGG GGGATTTCAT TTAGCAAGAC GACTTTTTCC TATCAGCTTG AGAGCCCAGG GGACATATGA 003040
003041 TCATGTGGGT AGTGTTATGC AGGTGAGGAA TGCTGGACTT AGCGCTCCAG TCCAGGACTA CCTCTAAACT AGACTATTTC 003120
003121 CCCAAGGATG GGATGCTGGG GCCAGAGGAT TAGTACCAGT TTGATCTAGT CTTAGGTGCA AAGATGCAAG TGTGAGACCA 003200
003201 GCTTGTACCA CAGGATAGAA TTAAGTATTT TCTAGTCCCA CTCTCAGATT CTGATTTACA ATCAC
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Predicted Small Protein

Name NONHSAT010656_smProtein_185:448
Length 88
Molecular weight 10097.9284
Aromaticity 0.16091954023
Instability index 41.4574712644
Isoelectric point 8.84063720703
Runs 13
Runs residual 0.0111658456486
Runs probability 0.0270474094004
Amino acid sequence MKEAVHWRFQVVMEGFQFMQTSVKMSFVIGEDIGNFTSQNRVSLLFRIVQLLLLPLCFLS
GSRWVPSYNIFFLISSLAILSWILCFA
Secondary structure LLHHHEEEHHHHHHHHHHHLLLEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHLLHHHLL
LLLLLLHHHHHHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHH
HHHHHHHHHHHHHHHHHHHHHLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTT
TTTTTTTTTTTTTTTTTTTTTiiiiii