NONHSAT010939
Revision as of 20:01, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010939 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2097 nt |
Genomic location |
chr10-:2037667..2046542 |
Exon number |
3 |
Exons |
2037667..2039337,2045441..2045652,2046329..2046542 |
Genome context |
|
Sequence |
000001 CCCAATCCTG CTCCCTCCAC TTCCCCGAAG ACGTCCGTCT TGAAGACGCT CCCAATAAAC TCCTGGCAGG CAAACCCAAA 000080
000081 TCTCAGGCCG GCCTCCCCAG AACTGTTTGG TGATGGTGCT TCTAAATCCT GGAAGTCTGG GTATGAGAGT GGAGGTGAAT 000160 000161 TAGCGATTGT GCGTGGCTTA TTTTACAGAT GAGGAATGAA AGTTACCATT TGGAAACAGG ACGACCTTAG CTACAGAAGA 000240 000241 CGTGAGGCTT TGGTGCTGTG GCTGGGAGTG GTGAGCTTCC CCCTTGGGCT CCTCACATTC AGAATGTGGG TGCTGGGGTT 000320 000321 GAGTATGGGT AGAAATTCTC CCCTATATTT ACAGCCATCA TTTATACAGA CAGTGGTATC ATTTGGGGCT ATACTGCCCA 000400 000401 TATAAATAGC TATTGAAATT TAAGTTCGCA ATCTCGGCTC ACTGCAACCT CGCCTCCCGG GTTCAAGTGA TTCTCCTATC 000480 000481 TCAGCCTCCT GAGTAGCTGG AATTACAGGT GCCCACCACC ACCGCACACC CAACTAATTT TTGTATTTTT AGTAGAAACA 000560 000561 GGGTTTCACC ATGTTGGGCA GGCTGGTTTC GAACTCCTGA TCTCAAGTGA TCCGTCCGCC TTGACCTCCC AAAGTGCTGT 000640 000641 GATTACAGGT GTGAGCCACC ATGCCTGGTC TCTTTGAAAA GATTTCTATG TGAGCATCCT TCCTGTCTTC TAAGATACTA 000720 000721 CCTCACCCAC ATAGTGCATC AAGTACATGC TCAATAAATA TTTGACAAAT AGAAGAATCA GCAAAATTTC TCTTGAAGAC 000800 000801 TACTCTGATC TCAGAGTTGA GCTAAGCTTT GTGACAGTTT TAATGGCTTT CAATGTGATA CCCTCAAGGA GTTAACAATG 000880 000881 TATTTAAGAA GATGATTATA ATACATGACA CAAATGTGAA TATAAGACAG CATGTAATTG AGTGCTAAAT TGTGTAGAAC 000960 000961 ATAGTCCATG TACTGTCAAA GTTGGAAGGA GACAAATTAG TGAGAACTGA AATAGCTGGG AAAGGCAATG CATAGAAGGA 001040 001041 TTTGAGCTAT GTCTTTAAAA ATAGGGTTTG GACAAATACT GTCAGAGGAA GATACCCTGA GCCCAGAAAC AAAGAGGAAG 001120 001121 ACAAGAAAAG TTCACTCTTC CCACAAACTG ATAAAGGGAC TACTCTGCAG AAAATGCTGG TTCAGCCCCC AGGGGAAATT 001200 001201 CAATGATAAG TCAAGAGAAC TAAATATAAC TATCATGCAT TGGCTGGTGG CTCAGAGTGA GACATGCTTT GAAGTGATTC 001280 001281 ACTAAGTTTA TTTCATTCAG TTCTCACAAA ACCACCTGAA ATAGGCACCA TTATTATCTC ATTTTAGAGA CAGGAACTAA 001360 001361 AGCATGATGA CATCAAGTTA CTCAACATCA TTGTGTTAGT CCATTTTCAC ACTGCTATGA AGAACTACCT AAGACTAGGT 001440 001441 AATTTATAAA GGAAAGAGGT TTAATTGGCT CACAGTTTCA CATGGCTGGG AGGCCTCAGG AAACTTATAA TCACGGTGGA 001520 001521 AGGGGAAGCA AGGCACATCT TACATGGCAG CAGGAGCGAG GGAGGAACTG CCAAACACTA CTAAAGCATC AAACCTTGTG 001600 001601 AGAACTCATT CACTATTACA AGAACAGCAT CGGGGGAGAC CACCTTCAAG ATCCAATCAC CTCCCACCAG GTCCCTCCCT 001680 001681 CAACACACCT GGATTACAAT TCAGGATGAC ATTTGGATGG GGACACAGAG TCAACCTTAT CAGTCATTTA GCTAGGAGAC 001760 001761 TGTGAGGATG GATGTGAGTC CACACAAAAG CACAGGGTAC ATAAGGAGGA GGTTAGGGGC AGAGTCAAAG CAGAGGCCCA 001840 001841 GAGTAAAAGT TTAGGGCAAA GGAGGAACGG GGGTGAATCC TGATGGGCGT TAGCAGAGGC TTCATGGATA TGAACAGGGT 001920 001921 CTCTTATGGA TAAAGTTGCA GATCTCTAAA CAGTTGAGAA AATCATTTAA GCAAATACTC ATACAAAGAA AAGTACAGAA 002000 002001 TAAAAGAGCA ATATACAATA TATTTAACAA GCCTACATAG TATAATGTAT AATAAAATAT AACATATTAC TATATAATTT 002080 002081 TACTAACATA AGTATCT |
Predicted Small Protein
Name | NONHSAT010939_smProtein_746:874 |
Length | 43 |
Molecular weight | 4920.7064 |
Aromaticity | 0.0952380952381 |
Instability index | 52.4738095238 |
Isoelectric point | 9.51702880859 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.0164134722958 |
Amino acid sequence | MLNKYLTNRRISKISLEDYSDLRVELSFVTVLMAFNVIPSRS |
Secondary structure | LLLLLLLLLLLLEEEHHHLLLLEEEEEEEEEEEEEEEELLLL |
PRMN | - |
PiMo | - |