NONHSAT010939

From LncRNAWiki
Revision as of 20:01, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT010939

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2097 nt

Genomic location

chr10-:2037667..2046542

Exon number

3

Exons

2037667..2039337,2045441..2045652,2046329..2046542

Genome context

Sequence
000001 CCCAATCCTG CTCCCTCCAC TTCCCCGAAG ACGTCCGTCT TGAAGACGCT CCCAATAAAC TCCTGGCAGG CAAACCCAAA 000080
000081 TCTCAGGCCG GCCTCCCCAG AACTGTTTGG TGATGGTGCT TCTAAATCCT GGAAGTCTGG GTATGAGAGT GGAGGTGAAT 000160
000161 TAGCGATTGT GCGTGGCTTA TTTTACAGAT GAGGAATGAA AGTTACCATT TGGAAACAGG ACGACCTTAG CTACAGAAGA 000240
000241 CGTGAGGCTT TGGTGCTGTG GCTGGGAGTG GTGAGCTTCC CCCTTGGGCT CCTCACATTC AGAATGTGGG TGCTGGGGTT 000320
000321 GAGTATGGGT AGAAATTCTC CCCTATATTT ACAGCCATCA TTTATACAGA CAGTGGTATC ATTTGGGGCT ATACTGCCCA 000400
000401 TATAAATAGC TATTGAAATT TAAGTTCGCA ATCTCGGCTC ACTGCAACCT CGCCTCCCGG GTTCAAGTGA TTCTCCTATC 000480
000481 TCAGCCTCCT GAGTAGCTGG AATTACAGGT GCCCACCACC ACCGCACACC CAACTAATTT TTGTATTTTT AGTAGAAACA 000560
000561 GGGTTTCACC ATGTTGGGCA GGCTGGTTTC GAACTCCTGA TCTCAAGTGA TCCGTCCGCC TTGACCTCCC AAAGTGCTGT 000640
000641 GATTACAGGT GTGAGCCACC ATGCCTGGTC TCTTTGAAAA GATTTCTATG TGAGCATCCT TCCTGTCTTC TAAGATACTA 000720
000721 CCTCACCCAC ATAGTGCATC AAGTACATGC TCAATAAATA TTTGACAAAT AGAAGAATCA GCAAAATTTC TCTTGAAGAC 000800
000801 TACTCTGATC TCAGAGTTGA GCTAAGCTTT GTGACAGTTT TAATGGCTTT CAATGTGATA CCCTCAAGGA GTTAACAATG 000880
000881 TATTTAAGAA GATGATTATA ATACATGACA CAAATGTGAA TATAAGACAG CATGTAATTG AGTGCTAAAT TGTGTAGAAC 000960
000961 ATAGTCCATG TACTGTCAAA GTTGGAAGGA GACAAATTAG TGAGAACTGA AATAGCTGGG AAAGGCAATG CATAGAAGGA 001040
001041 TTTGAGCTAT GTCTTTAAAA ATAGGGTTTG GACAAATACT GTCAGAGGAA GATACCCTGA GCCCAGAAAC AAAGAGGAAG 001120
001121 ACAAGAAAAG TTCACTCTTC CCACAAACTG ATAAAGGGAC TACTCTGCAG AAAATGCTGG TTCAGCCCCC AGGGGAAATT 001200
001201 CAATGATAAG TCAAGAGAAC TAAATATAAC TATCATGCAT TGGCTGGTGG CTCAGAGTGA GACATGCTTT GAAGTGATTC 001280
001281 ACTAAGTTTA TTTCATTCAG TTCTCACAAA ACCACCTGAA ATAGGCACCA TTATTATCTC ATTTTAGAGA CAGGAACTAA 001360
001361 AGCATGATGA CATCAAGTTA CTCAACATCA TTGTGTTAGT CCATTTTCAC ACTGCTATGA AGAACTACCT AAGACTAGGT 001440
001441 AATTTATAAA GGAAAGAGGT TTAATTGGCT CACAGTTTCA CATGGCTGGG AGGCCTCAGG AAACTTATAA TCACGGTGGA 001520
001521 AGGGGAAGCA AGGCACATCT TACATGGCAG CAGGAGCGAG GGAGGAACTG CCAAACACTA CTAAAGCATC AAACCTTGTG 001600
001601 AGAACTCATT CACTATTACA AGAACAGCAT CGGGGGAGAC CACCTTCAAG ATCCAATCAC CTCCCACCAG GTCCCTCCCT 001680
001681 CAACACACCT GGATTACAAT TCAGGATGAC ATTTGGATGG GGACACAGAG TCAACCTTAT CAGTCATTTA GCTAGGAGAC 001760
001761 TGTGAGGATG GATGTGAGTC CACACAAAAG CACAGGGTAC ATAAGGAGGA GGTTAGGGGC AGAGTCAAAG CAGAGGCCCA 001840
001841 GAGTAAAAGT TTAGGGCAAA GGAGGAACGG GGGTGAATCC TGATGGGCGT TAGCAGAGGC TTCATGGATA TGAACAGGGT 001920
001921 CTCTTATGGA TAAAGTTGCA GATCTCTAAA CAGTTGAGAA AATCATTTAA GCAAATACTC ATACAAAGAA AAGTACAGAA 002000
002001 TAAAAGAGCA ATATACAATA TATTTAACAA GCCTACATAG TATAATGTAT AATAAAATAT AACATATTAC TATATAATTT 002080
002081 TACTAACATA AGTATCT
[back to top]

Predicted Small Protein

Name NONHSAT010939_smProtein_746:874
Length 43
Molecular weight 4920.7064
Aromaticity 0.0952380952381
Instability index 52.4738095238
Isoelectric point 9.51702880859
Runs 6
Runs residual 0.0333031946956
Runs probability 0.0164134722958
Amino acid sequence MLNKYLTNRRISKISLEDYSDLRVELSFVTVLMAFNVIPSRS
Secondary structure LLLLLLLLLLLLEEEHHHLLLLEEEEEEEEEEEEEEEELLLL
PRMN -
PiMo -