NONHSAT011262

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT011262

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6646 nt

Genomic location

chr10+:6828670..6843827

Exon number

3

Exons

6828670..6834089,6834418..6835207,6843392..6843827

Genome context

Sequence
000001 GGGCCCTAGG GGGAGGAACT GAATTCTTTA TGAAAGAGGG AAGACTTGAG CTGACCTTGA GATGCATTTT AAATCTTTCA 000080
000081 TTTTTTAAGA AAATATAATC GCATGGCAGA AAACTTTCAA AGTTCAGGGA AAAAATCACT TCATTGCAGC AGTCATTCTC 000160
000161 TACAttcttg gcaggtttat tcataatagc atgaaaggaa aacagcccaa aggtccatgc gcagcaaaag gaataaacag 000240
000241 attaacagta cagtcacacg atggaatact aactccatag cgctaaaaag gaatgagtgg atacatacag cagcagggat 000320
000321 taatctcaaa tacattaggc tgagtaaaaa aagccagacc caaaaagtgc atttatagga agttcaagaa caggcaaaac 000400
000401 taatctatgg ggataggaag caaaatcata ggtgctgctg atgtaggaga ccccctgata gacaggggcg cagggaactt 000480
000481 cctagaattg acgctgcatt ccaactgggg cattgggcag gtagtgtata ctgttgtcaa cactcatact gtgtgcactt 000560
000561 acgagctgag cattttacag tatgtagtgt gtaattatat caccccaaat aaTTGAATCT ATTTTCCTAA AACCTATTAC 000640
000641 TCAGTGATAC TAGTGTTTCA CTTGGAATCT ATGCATTTTT TTCCTACAAT TGAATGTTGA TTATTCCAAC CTGTACTGCA 000720
000721 GACTTGGGGG AGCCAAAGAC AAGCCTCTGC TTGATCTTGC TTTCAAGGTC TCTGAATTGA GATCAGACCT TCACGATTCA 000800
000801 TTCTGTGTGT TCACACAAGG GTAGGGAAAG AGCTCTGGAT GGAAAGAGAT ATTCAAGTTC ATGTTACTCT GCAGAGCTCC 000880
000881 TGAATCAATG ACTTGAGACT AGGCAAGAGA AAAAGAGTCA ATAATCTAAT AGGTTTACTT TTCTTCAATA AATGGAGGCC 000960
000961 ACTCTTGATA ATAATGACCT CAACTCTATC CTTGTTATCC AGGAATAAAG TGCATCAGCT ATACTCTTGA GTAAATGAAA 001040
001041 CCAGTCTATT GAAAATAATG aatagaggct agcatttatt tacttattac tgagccaagc aattcacatg cattaatcat 001120
001121 ttaatcctca caatactcta tgaggcagac aatatgaaga ctgtttttcc gagcacagaa aggttaagta acttgcctaa 001200
001201 agttgcacag ctagtgagag gagaagccag aatCAATGCA TTACTTGGAA TGAGGACCAG GAAATGACAA TGGAATATAG 001280
001281 AGGGAAGCGG ACAAATGGAA AATAAATAAT TAAAACCTCT ATTGGACAGG CAATTCAaag agacattggg tattatcaag 001360
001361 caaatactca tttgcagaca atgaaactga ggcccatgaa ggttacgtga cttcccaagt cattcatcta attaggagag 001440
001441 agctgggaca agaagccata ttttaaaaat cccagctcag ggcctttcta ctACATCaaa aaaaaaaaaa aaaaaaaaTT 001520
001521 AATTGATTTT TTTTTCACAT AATGTCCAAT TTTGAAATCT ATCCCTGAGG GGATTGTTGG TTAGATATTC ATAGTattat 001600
001601 aaaattcaag tcttggaaac ggcctggaaa gatcttatgg ccgttggctc caaattcaag cagcatcaca cttaaaccat 001680
001681 cccatccaga tgagaatctt tcccagtttt taaagtcttc cagaTGTATC TCAACTGGAT TTTTAAATCT GTTTTCCAGA 001760
001761 GCAAAACAGC AGAATTTGGA AAATAACCTA ATATGCATAA ACCATGAATG GCATCCCCGG AGAGACACAA GCCCAAACCC 001840
001841 TGAGCGTCCA GAGCATTTTA ATTCGGGATG CAGTGCTTTA AAGCCCTAGG GATTATTTTC AGCAGAATTG ACTCTATGAA 001920
001921 TATGAATTAT TCTTCATGTC AGCCTTTTTT TTTTTTTTTC TGAGAAGGAA ATCTGATACA AGATTGAATA GGAGAACAAG 002000
002001 TAGCAGAATT TAGGGCAATA TAAAAGGGCC CTGGAAGGCA GGTGAACACA TTTTTCTTCC TTGCCCAGAA AAATGTCAAT 002080
002081 AGGCATTTTA CAGCTTCTCC TTTTCTTTCC TTTGCATTCT GTCCTCACTG AAAATGCCCA GTTCACAGCC TGATATTCTT 002160
002161 TGAGCGTTTT TCCATTCAAG TCCCAGTTAA GTGATCACTC CTGGGTCTCC AACTGGTTTC GGTCCCGAAG CTGTGTTTGC 002240
002241 AGAGATGGAA GGATGCTTGT TGAAGTCGGG ACGTCCAAGG GCCACATAAG TGAGGATCTA ATTGCCGTGC CTTGTCTCAA 002320
002321 GGAGTCTTGA GTTCATGATG TCTTATATTT CTTCATTACT TCCCAAAGCA AAACTTTGTA CATCTAGACA TATACGACAA 002400
002401 GTTTGTTTTT TATGATTGTT TTAGTTTGTC TTGGCAATTG ACGTGGGAAG TTGTTAATGC AGTAGACAGA TGAAATAAAG 002480
002481 ACTTGGAGAT TAGATGAACT GCTCCAATCA GAGCCTGGAT GCAATGCCCT GTTGCCCTCT CTTTCAGATC TATCCAAAGT 002560
002561 TAACTTGACT CCATCGACTG GCCCTTAATT TCTGCAGTTC TCTCAGTTCT GGGAATAACC TTATGATTGT TCTTCAGGTG 002640
002641 GAGACCCTAG AAAACCTCCA GAGTTTGCTT TGATCCTCAT ACTCCACCTC CCAAGGAGGA ATAAATTTGG AAGTGTATAA 002720
002721 TAAATCAAAG ATAAATTTGG AAGCACATAT GAAAAAGCTT TTATGggact tctgcttttg agtaagatgg agatattggt 002800
002801 gacagactaa tcctgaaaat cagaacaact agatgaaaca gataaaatcc aaaaattatc tgttttaaag gtaccaagga 002880
002881 gctgttgaag caatgtaggt agagaggctg aaagacagca aaggggagaa tctgcaccag ccttttatcc tggggcactg 002960
002961 tgggttcact gtgagttctg ggtgagaacg agaagcttgg catctaaact ctacccaaac cccttctcag cgggcaggat 003040
003041 gcagaggttt cagcagagct cagggaaggt agccaggatg tgcaacacaa tagggccttc aacacaggac cagcttcccc 003120
003121 ctcaagacat ttgctgaatt ctgaagctgc aagggaagga cataggaaag ctaagctgag tacatcagaa gagctgggtc 003200
003201 gagttttctg cagtgtgacg atgccttgga gacccaggtt agagttcagt tcccaggaga ggcagtgttc ctgggatgca 003280
003281 ccagcctcag tcaaagccct ggaagttcat gttgccggaa gaggatcagc ccagaggagg cttacccaaa ctgcaaAtta 003360
003361 aaggcaaaat agtgaaagct ttccctcaag tggtggaaag aaataagggt gcctactgtt taccacttct aacctacatg 003440
003441 gtcctggaag tccaggccag ggcaataatg caagccaacg tataaagggc agaatcattg gaaaggaaga aaaaacttac 003520
003521 tagacacaga tgaactgtct ctatatgaag aaaaatccaa aagaatctgc aaacaactta aatttaatgt ctctttacgc 003600
003601 agtctccgca tgtaaggtca gtataaaaaa atcacctcta tatctataga cctgcaacac agagaaaata aaatcttgca 003680
003681 attgcaggat ttgcaacagc atcgaggaat attaaatact taaatagaaa ttttaaagag gtatatgaga tttgtgttct 003760
003761 aaagccacaa agcatctctg agagggaact caaagggaga tctaaataag tagatatagt aaataagtag atctaggaca 003840
003841 tttgtcaatc agaagactca cttgtaaaca tgtcgactct tcctacatgt atccccagcc tcatgcaatc ccaggagatt 003920
003921 acatgtgtgt gtatttgtaa attgactcaa gtgattacaa gatttatatg aaaatgcagt gagccaaaaa tagccaggaa 004000
004001 atcttaagga ataagagcgg agAGCAGAGG AAGGCTTCAT GGGCCGGGTA GGGGGGCGGG GAGCCTTGAG CTAAGCCGTT 004080
004081 GGGTGCATGG GTGGTAAGTG GAATTTTGTT AGGGACTAGA ACCATAACAA gtttgttggg gtaaccctaa cacctatcct 004160
004161 aatgcctgcc tgatgcctaa caaatattca ataaatattg gttaaatgTA CATATGAATG AATGGACAGA TGCTTGAGAT 004240
004241 AAGAGTATGT CAGGTTAAAA GGACAGTAGA AGCAACAGTA AAGAAACACG AAACTATCTT ACAGTGAGGC ATCAAATGTG 004320
004321 TCCTAAGTGC GTATGTGAGC TGCAGAAGAA AGGGAGGCTA GAATATTCAG ACAGGGCAGT GTTGTGCAGA GGTCTGAAGT 004400
004401 AGGCTTGTAG CATTTGGACC TTACTCTTTA GGCATCTAAC ATTTTGGAAC AATGTAAAAT GAGTGATAGG TTGGGAGATG 004480
004481 AATTGGGCCA GTGACAGGGG AGCCACATGA CACCCACCCA GTCACTTCCC TGAAGGACAC CCTCTTTGCT TTCTATATCC 004560
004561 AGCACCAGCA ATAAAATTGG AATTCTTTGC TAAGGTCATT GTTCATATAT TTAATATAGA AATCTCCCCA AATGTTAAAA 004640
004641 GCTGACAGAC ACTTAATTTA AAAGCCTAAG TACTCTCTGT CTGAGCCCTG ACTATGCCAA AAGCAAAGCT TTTTGTGCTA 004720
004721 TCAAGAATTT GATGGGATTT CCTTTTTGCA TTTCCTTTTC AAAAACCATT AGAACAGCCA GCACCATGCT CCTCTGGAGA 004800
004801 CCCTTACATT CTACCTTCAT GAATTTTCTT GGTTAGGAAC AGAGTGCATG AACTCTTTGG GTCTCTCTGT TAGGATGGGT 004880
004881 TTCAGCTAAC TGTACTTTAG TACAGTTAGT ACCAGTGCTT TAATACACAC AAGCTTACAC TCACAACGAA GTCCAGAGCA 004960
004961 AAGCAGTCTG TGATGATTAT GGCAGTTTCA TGCTGTCATC TCCTATGAGA CAGCCCTGCC AGAAGGGctg ctcacatcct 005040
005041 gatggctaga actggttaca tggctgtgct ggttgcaaca aaagctggaa aatgaagtGT ATTGATACTC CAAAAGAAGC 005120
005121 AGAGTTTCGG TAATACAGAA GAATATTGGT GGACATTGAA TAGGTCACCA GCAGTCATTG CTACATGATC CAGTCTTCCT 005200
005201 TTCTAAAACA AGAACAATCT TGTAGAAAGC GGGAACTTTG AGACTTTCTT AGCTGAGAAA TTTGTTGTTA TTGTTGCTTT 005280
005281 ACAATCTCTC CTCCTCTCCT AAGAAGTTGT CCAAGGAAAC TGGAGGTTCT TTGTTTCTTA AGCTGGTTGA AGATATAGTT 005360
005361 TGCAAACCTG AACAGAACAA AATAACTATT CACCAGAAGA AGAAGAAAAA AAAAAGGCAG CGAATATGTG ATGTtttcac 005440
005441 agatcatgaa attgaagggt acaaaaaaag aacttctatt tttctgtgac taaatgtcga tttcaagttc tcatacctcc 005520
005521 tggagttaaa aaataagatc cagtcaattt cagtgaaaac ctgttacttc tgcttttcag tgatttgggc tttacactca 005600
005601 CAGATCTGAG AGTCTCTCTT GCCCCCCTGG TAACACATTT CAGAGCTGGA GAAAGAGAGG GAGAGGATGG GGGTTTGGAC 005680
005681 ATGGCCCATG TTCATCTTCC CAGTATTCTC TGACAGTCAG CATTCTCCCT GCTGACTTGG GCGGATATGC CATGTCCAGT 005760
005761 TGGGTCCTCA CCATTCCTGG TGGCCTCACC TGAGCTGAAA CAGCATCTCT CCTGGGCCCC AGGTGAAGGG TCCATCATGC 005840
005841 CTTGTGCTCT GGCCTCCTGC TGCCCCATGT GGAGTGGTCC TTTGCACCTG CCGGCTCAGT CTCTCTCAGC CACCCTGTGT 005920
005921 CTCCTTGAGG CAGGGGGAGA CTCAGGCGCA GTCATAACCC TCTGAAGTGC TAGGACTCCA TGCTGCCATG TAAAATACAC 006000
006001 ATTTCTCTAT TTTTTGGGCT CCCAAAATAG AACTAAGGTT GGGATGGGGT AGTATCTGTA CTATGTTTCA Aacacacaca 006080
006081 catacacaca cacacacaca cacacacaca cacacacaca cacacGGAGG AAGTTTCTCC CTCAAAGACC CAAAACTAGC 006160
006161 AAGAGGTACC AGTGATGGGT CTTTTGAAGG GGATGTCATC TGCCCGTCAC ttgcattggg gtcaagcggc attgcagaag 006240
006241 aaaataaggc atttaggttt taggtcaggt gtgagttgag gttttatgtt tttgagaaca caggccaagg gagtagaagg 006320
006321 aggaatggag ggtggaatgt tcccatagtg aaggaagcaa gcctagagag aagagagagt agagaaatgg agggaaggga 006400
006401 ttcaggggtt cttaccttcc agaaaagtgg gaaaaggggt ttgggtgcag agataagaag tcagggcatg gaaataaggg 006480
006481 atggggcaca gaaataagag gtcagggcat ggaaataagg gattggggtg cagagatatg aggttggggt acttgcccat 006560
006561 cctctagaaa agcaggactt gccactaaga gtgaaggaga aggggttgag gagtacttgc ccctctccca gaaaagcaga 006640
006641 gaaggg
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Predicted Small Protein

Name NONHSAT011262_smProtein_3275:3484
Length 70
Molecular weight 7890.3459
Aromaticity 0.0724637681159
Instability index 61.5028985507
Isoelectric point 9.72967529297
Runs 9
Runs residual 0.0088965418281
Runs probability 0.0225715911991
Amino acid sequence MHQPQSKPWKFMLPEEDQPRGGLPKLQIKGKIVKAFPQVVERNKGAYCLPLLTYMVLEVQ
ARAIMQANV
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLEELLLEEEELHHHHHLLLLLLLLHHHHHHHHHHH
HHHHHHHLL
PRMN -
PiMo -