NONHSAT011515
Revision as of 20:03, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011515 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
790 nt |
Genomic location |
chr10+:13686791..13697482 |
Exon number |
6 |
Exons |
13686791..13687074,13690085..13690230,13690626..13690768,13694846..13694882,13696353..13696427,13697378..13697482 |
Genome context |
|
Sequence |
000001 AAGGGAGAAA AAAAAAAAAT CACTGTTCTT TGTAGCTCTA ACCATGAAAG TAAAAGCAAC AAAAATATCC CCCAGTGAAT 000080
000081 CCCTAGAATC ATTTAATAAT GTAACCGGTA TCTCTTTATC CTGCAGGTGT ACACTTAAAG CGTTCTGGGA ATATGAATCC 000160 000161 CTTCTGCACC CTGGAATCAC CAGTCCAGCC ATGCATGGAG CTGGGGAAAG CAGGCCCTGA ATTGTCTAGA GAGACTTGGT 000240 000241 GGAGGAGGCC ACGGCCCGCC TTGTCCCTGC CGGGTCCCGG CCAGGAACAA CTGGATGTTG TAAATGTTTC TCATCTGGCC 000320 000321 TTAAAATCCA TGAAAGCTGG AAAATCACAA GGCATCTGTG CATATACTGG TGGATTTTAA TGAGAGTCCT GTGTTTGGAG 000400 000401 CACCAGAAAT AAACCAGCTT CAGAAGCAAA GTTAACAGGA GGAGGAAGCA GAGCTAGAGA TGGAAGGAGA CCCAGCCAGC 000480 000481 CCGGGCTCCA GTGACATCGG CTGGTACACG CTTTTGTTTG CTTACGCTTG TTGAACTGAG TTTTTCATAT GTAACTAACG 000560 000561 AATACTGGCA CATgtaagcc cgagaatttg catttctgac aagatcccag GATCTGAACG TCTATGACAC TCTTTCGAGC 000640 000641 TGACACAGTG AAGAACATAG AAGGAGAACT CACCCAGTCT GCCAGGGTCA CAGAATGATC ATACTCAAGA TCTTCCTGGG 000720 000721 GAGTCAATGG CAAATTTCAC TGGGCTATTT TACAGATGAA GAAGGAACAT AAAGAAGGTT CTGGGACCCC |
Predicted Small Protein
Name | NONHSAT011515_smProtein_152:379 |
Length | 76 |
Molecular weight | 8156.3627 |
Aromaticity | 0.0666666666667 |
Instability index | 55.644 |
Isoelectric point | 8.58941650391 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.0457312516136 |
Amino acid sequence | MNPFCTLESPVQPCMELGKAGPELSRETWWRRPRPALSLPGPGQEQLDVVNVSHLALKSM KAGKSQGICAYTGGF |
Secondary structure | LLLEELLLLLLLHHHHHLLLLLLLLHHHHLLLLLLLLLLLLLLLLEEEEEELLHHHHHHH HLLLLLLEEEELLLL |
PRMN | - |
PiMo | - |