NONHSAT011853
Revision as of 20:05, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011853 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1220 nt |
Genomic location |
chr10+:26976921..26982381 |
Exon number |
5 |
Exons |
26976921..26977217,26977886..26977985,26978326..26978528,26979489..26979726,26982000..26982381 |
Genome context |
|
Sequence |
000001 TTTTTTCTTT AAAGACTGTG ATTTTCTTGG GACCAGGGAC TATGACATAC TTATTACTCC CAGGCTGGGC ATGGTGGTTG 000080
000081 ATACCTGTAA TCCCAACACT GTGGGAGACC AAGGCGGGAA GACTGCTTGA GCCCGGAGTT CAAGGCCAGC CTGGGCAATA 000160 000161 TAGCAAGACC TCATCTCTAC ATTAATTAAT TAATTACTTA AAGAAATACT TATTACTCCT GGACCCCTTA AAGTGTGGTC 000240 000241 CAATGGCAGG CACAGAAAAT GGCCAATAAG TAGTTTTGGG GTTGGCTGGA CCATTCAACA GTGGCTCCTG GGCAAATGTT 000320 000321 AGGATAAAAG CACAATGGAA GTATCTCTGC ATATGTGAAG ATCTAGAGAT GAAAATTCTA CTATTGTCCT AATAGAACCT 000400 000401 AAAACTCCTA TGTTGATACC CAGTCACCAA AGTGATGGTA TTAGAAAATA GGGACTTTAG GAGGTGACTA GGTCATGAGG 000480 000481 GCTCCGTCCT CATGAATGGG GTTCATGTCC TTATGAAAGA GGCCCCAGAG AGCTGCCTTC GCTTCCGCCA TGTGAGGATG 000560 000561 AAGTGAGAAG GCGCCATCTA TGAAGCAGAG AACCCTCAAA TGTACATGTA CCCCTGAACT TAAAAGATGA AAAGAAAAAT 000640 000641 AAATTGATGT TCAAGTTTGT CACAGGTGAC CCTTAAAGTC CTCCTAATGG CTTGACTACT TTGTCTTTTA GTCTACAGGA 000720 000721 CTTTGAAGAA GGAAGGAAAT AACTAACCCA GCAAACCAGA ACCTGATGCT ATAATAATTG TAATAGTTAA CATGTTAAGC 000800 000801 ACTTTACATG TATTTCCTAA TTTAATCCTA CACCAACCTA TCAGATTTAT ATATATATAT ATATTCTTTT TGAGATGGAG 000880 000881 TTTCTCTCTT GTTGCTCACG CTGGAGTGCA ATGGTGTTAT CACGGCTCAT TGCAAACTCC GCCTCCCAGT TTCAAGTGAT 000960 000961 TCTCCTGCCT CAGCCTCCCA CGTAGCTGGG ATTACAGGCA TGTGCCACCA TGCCCGGCTA ATTTTGCATT TTTAGTAAGG 001040 001041 ATGGGGTTTC ATCATGTTGG TCAGGCTGGT CTCAAACTCC TGACCTCAGG TGATCTGCTC ACCTCGGCCT CCCAAAGTGC 001120 001121 TGGGATTACA GGCATGAGCC ACCGCGCCCA GCCAACAAAT ATATATTTTT AAATGGAGGT GAGCTGCATT ACAGAATTAC 001200 001201 AAGTATAGTA CTAGTTAATT |
Predicted Small Protein
Name | NONHSAT011853_smProtein_791:958 |
Length | 56 |
Molecular weight | 6519.6404 |
Aromaticity | 0.2 |
Instability index | 46.7545454545 |
Isoelectric point | 9.62506103516 |
Runs | 6 |
Runs residual | 0.0424242424242 |
Runs probability | 0.0502708590945 |
Amino acid sequence | MLSTLHVFPNLILHQPIRFIYIYIFFLRWSFSLVAHAGVQWCYHGSLQTPPPSFK |
Secondary structure | LLLLLLLLLLLLLLLLLEEEEHHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii |