NONHSAT012838

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT012838

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1339 nt

Genomic location

chr10-:38977632..39022206

Exon number

10

Exons

38977632..38977730,38978430..38978565,38979450..38979558,38983372..38983521,38984365..38984470,38984942..38985062,39005042..39005216,39017958..39018085,39019400..39019542,39022035..39022206

Genome context

Sequence
000001 CATACCTGTA CAGCCTGATA CTTTACTGAA TATACCATAA GCAGTTGTAA CACAATGTAA GTACTTGTGT ACCTGAACAT 000080
000081 AGAGAAGGTA CAGTAAGAAT AGAGTATAAG ATATTTTAAA ATGGTACTCC TGTATAGGGC ACTTACCATG AAAGGAGCTT 000160
000161 GCAGGACTGG AAATTTTGGC TTTTGTTGCC ATTGCTTTTG GTGTTTTAGA CATGAAGTCC TTGCCCATGC CTATGTCCTG 000240
000241 AATGGTAATG CCTAGGTTTT CTTCTAGGGT TTTTATGGTT TTAGGTCTAA CGTTTAAGTC TTTAATCCAT CTTGATGCCC 000320
000321 AGCTTTGGTA TGAGAATGAC ACTGGCCTCA TAAAATGAGT TAGGGAAGAC TCCCTCTTTT TCTATTGATT GGAATAGTTT 000400
000401 CAGAAGGAAT GGTACCAGTT CCTCCTTATA CCTCTAGTAG AATTGGCATG CACCTGTAGT CCCAGCTACT CAAGAGGCTG 000480
000481 AGGCAGGAGA ATCGCTTGAA CCCAGGAGGC AGAGGCAGAG GTCGCAGTGA GCCAAGATTG CGTCACTGCA CTCCAGACTC 000560
000561 AAAATATATA TATATATATA TATATATATA TATATATATA TATATATATA ATCATTATGT GGAAATAAAT TGCCAACCTT 000640
000641 TTCATGTCAC CTCCCAACCT TATCTTTATA TCCTCTGATT AACAATTTTC ATTAGTAATG TGTTACACAA CAAATACTTG 000720
000721 TTTAGACTAA CCTACATTTT TCTCAAATAT TATGTCTTCT TCATTCTTTC AATTATGTTT CTGAAACTAC CAATAATTGT 000800
000801 GTTTTAGATC TTTTCCATAA TCTAAATCTC TCATTTTCCA CCTCAAAAGT GCTGGGATTA CAGGCGCGAG CCACCATGCC 000880
000881 CAGCCTGGTC CATTATTTTA GTAAATGTTT AGCCCTCCAA GGCTTCCAGT TTTGCAGGAT GACAATAATC AGAGGGGACG 000960
000961 AGGAAAGAAA CTTTCTTCTA ACTCTCTGCC TGGAGTGTTT ATTTTCTTTC TTTTAAGGGA TGTTACTGGC TGGTTTTACA 001040
001041 ATTAGGAATG TTCCATTCAT CAATGAACAT GTCCATGTTC CTAACGCATG GTCTTCAATT TTAAAATGAG ATTATATTCT 001120
001121 CCAGTAGAAA GTATGAACCA AGGAGAAAAT TGAAAAGTTC TCTCTTTTAA AATGAATTAT GCAGTTTTTA AGTTATTTTC 001200
001201 TTTGGCATGT TAGTATTGTA TTTATACTTA TCACGTTAAT TTCACGTGAT CAATTTATTC CTTTTCATCT GTATTATATC 001280
001281 TGTATGTTTT AATCTATCTA ATGGCCTATT CCTCATAACT ATATGTAAAT ACAGTTGCA
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Predicted Small Protein

Name NONHSAT012838_smProtein_875:1015
Length 47
Molecular weight 5469.4702
Aromaticity 0.173913043478
Instability index 64.6652173913
Isoelectric point 6.51031494141
Runs 7
Runs residual 0.00918737060041
Runs probability 0.0311530017413
Amino acid sequence MPSLVHYFSKCLALQGFQFCRMTIIRGDEERNFLLTLCLECLFSFF
Secondary structure LLLHHHHHHHHHHHLLLLEEEEEEEELLHHHHHHHHHHHHHHHHLL
PRMN -
PiMo -