NONHSAT014994
Revision as of 20:13, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT014994 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2044 nt |
Genomic location |
chr10+:79542624..79552934 |
Exon number |
2 |
Exons |
79542624..79543087,79551371..79552934 |
Genome context |
|
Sequence |
000001 AAGAGACTGA GTCAGTTCCC ACTTGTGAAT AGACAGCATG AAGGCTTTAA ACCTCTCTGA ACCTGATCAG CATTGGCAAT 000080
000081 GATCTTCTGC AGATCCAACA ACAGCACAGA AGAATGTATC ATCAGGAACA CATTTGGATA TTGACACAAC TTCATCTGCA 000160 000161 GTTGGCTTGT CATCCTGAGC TCCGTTCCCA GGCAGCGTAG ATATTGCACA GGATTTTGCT GACCAGGGAG TTGGGTTATA 000240 000241 AGTGGTAACT CCAACCTCTT AATACTAACG ACATTGACAG TACCATATAA TCCATCTATT ACACCACACA GGAAAATCAA 000320 000321 GCCCAGTGGT ACAGGACAGA AGAACTGGCT CCAGCCAGGA TCAAGCATTG CTTTGGCATT GTTACCCAAT ACCTGGGCCT 000400 000401 TTCTTCTCCA ATTGTTGGGG TAACTGGAGT GAGGAGCCTG AGGGGACCCA AAGGTGTTCT CCTGAGCCTA AGGAGGACCC 000480 000481 AATGGCAGGC ATCAGCACAG CTGAACACCA CCTGGACCCC ACTGCAGCCC TGCCCACGCA GCTCTCACGG AGCAGACACA 000560 000561 GTCCTCAAGT AATAAGCACA GATGGAGGAG AAACGAGAGG CTGTGGAAGG CAGGAGAGAA AGGCCGAGAG ACGAGTTTGT 000640 000641 AAGAATGCCA AAGTCACCTT CCCCATTGTG GGAGGAAAAT GCCAAAGGCA CTGGTTCTGC TGCCACAGGC AGTCTGAGCA 000720 000721 CCTGGAGTTG TGACGTCCTT CCAGGAGAGG TGCCACCAAG GAGCAGGAGG TTTGTCAAAG CTCTGGTCCC ACCAACAAGA 000800 000801 ACCTCCCAAA GCAAAGCAGC CCCCATTGAG GTTCCAAGGT CGTTTTGCTG AAGACGGGAA CGAAACCAAC ACCAAAGCGA 000880 000881 CAGGGGGTTG ACAGAGGGGA CAGGGGCTGG GCACCGGCAA CATGGAGCCG TTCAAGTAAA CATAAACCAC CAAATACTTA 000960 000961 GAAAAGGCTT GTAAACGAGT GATCCGAAAG GTTCTCTTTG CAGCATCTCT GATCAGCTGG CTAAAGAAAG GTGGGTGCTG 001040 001041 AACCCGTCTT TAGTGTTATC TGTTTTGTGT TAAAGCACAC GTGTGACACG GGCAGAGTGT GTGGGCCTGG GCCTGGATCG 001120 001121 CACGCAGCCG TGGCCCTCTG TCTACAAAGG AGGTGCTTCT GGGTCCTGGT TCCGGATCCT TCCCCCGCAT GTTCATAGAC 001200 001201 GGACAGACTT CTACTTTCAG TCGCTAGAAA AGAGCTGAGT CTGGTGTCCC CTCAGGCGGC CAGCTGCAGT CATCCACAGC 001280 001281 ACAGCATTCT CCTAGAGCGG GCAGGCTGGA ATCCACAGGA CTTTATTTTG TTCTTGATTG ACCATTGCCA AGATCTGAGT 001360 001361 GCAAATGCTT GACAGGGCTC CTCCCTGGAT GACCCCTGCA AAAGAGCCCC CCAGACACGT CATTCAGCTC AGAGTAAGAC 001440 001441 CCCAGGTTTG AGGCAAGGCA GTACAGCTTG CACTCTTTCT ACTGTGTGGC TGTCTGCTTT GTGCTCCTTG GCACTCTGCT 001520 001521 CCATCCCCAC CTGACTCTCC TTCACCAGCA AGAAACTGGG AAAGAAAATT GCCCCTCTTG AGTTGATCAC TCATATGTAA 001600 001601 ACTGCCCACC CCACTGCAGT TAACACCCTG GGTTGGGTTT GCAATGGTTG GGGGAATCCC AGGGCATCAG AAGGAAGTTT 001680 001681 GGAGGACATG TGGCGGTGGT CTAATCATTA GCAGGATTCT GCAGGAAACG ACAAGTTTAA GGAGCCAGAT AGCTCATGGC 001760 001761 CAAGAGGAGA GTCACAGAAA GATGATGGCG CCAACTTGGG CCAGCCCTGT ACTATAGGAG TTTGACAAAG GGGTCTATAG 001840 001841 ACACCAGGCC AGGGGTACTC CAGTGTGCTC CACATAACAG CACCTGGACA CAAACCAAGC CCCTACTGCA ACAAGGCATG 001920 001921 CTCAGAAATT GACAGTGAGT GTCTAGAAAC TGCTATGGAA ACAGGACGTC GTAATTTTAT GTCTGTTGAA TCTAACAAGA 002000 002001 AAAAAATAGA GCTTACCTTT TGCAAGACAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT014994_smProtein_581:850 |
Length | 90 |
Molecular weight | 9910.1516 |
Aromaticity | 0.0561797752809 |
Instability index | 91.3831460674 |
Isoelectric point | 9.58001708984 |
Runs | 13 |
Runs residual | 0.00286406697511 |
Runs probability | 0.0380878616173 |
Amino acid sequence | MEEKREAVEGRRERPRDEFVRMPKSPSPLWEENAKGTGSAATGSLSTWSCDVLPGEVPPR SRRFVKALVPPTRTSQSKAAPIEVPRSFC |
Secondary structure | LHHHHHHHHLLLLLLHHHEEELLLLLLLHHHHLLLLLLLLLLLLLLEEEELLLLLLLLLL LHHHHEEELLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |