NONHSAT017507
Revision as of 20:24, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017507 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1478 nt |
Genomic location |
chr11-:2349979..2399222 |
Exon number |
3 |
Exons |
2349979..2350922,2356141..2356249,2398816..2399222 |
Genome context |
|
Sequence |
000001 GGCAGGAATC CGCGGCCAGG GACCCGCGCA GGCCCCTCCT TAGCTGAGGG GCGGCCGGGT ACTCGGGTCC CGACCCGCGA 000080
000081 CCACCGCACC CATCACCACC ACAGCGGGAA CTGCCCGGCG GCCCCCAGAA GCCCCGGCCC GGCCGCAGAG GTGGGCCCCC 000160 000161 GAGCACAGAG GCCCCGAAAC TCGGCTCGCA GCCCTCAGCC CCAATGTCGG GGGGCGCGGT GGCCCCGGGC GACCCCCCAC 000240 000241 CCCGCTCCTG GAGCCCACAG GTGGCCCCAC AACTTCGCGG CCCGCGCTGC GCCCGCGGGG CCTAGCACGC TGCCGCGGGA 000320 000321 CCTGCCCAAC GTGGAGTGTG TGCCTGCCCC CTCCCGCCCC GGCCCCCGGC GCAGCCCTTA CCCAGAAGAC GAAATTGAAG 000400 000401 ACGAAGAGCA GGAATATATT CAAGCAATTA TGAGAACTTA TACAAAAAAA GCTATAAACT CTACTGAGAG ACATGAGAAA 000480 000481 AAACATGAAT CAGCGGAGAG AGAAGCTATT TTCCTTCATG GAGGAAGAAA CAGTGTGGTG AACACATGGT ATCGTCTGTT 000560 000561 CCGCCATCCA CCCCTCTGTT GACCTGCCAA AGTCCACCCA GTCACTACAC CCTCTCCAGA CCCAGCATCT CCGATGGATG 000640 000641 AGCACATCAG GTTTGGATAT GCCCTCTCTT GGTCCAGCAC CCTATGAATT TAAACATTGA GTTATCTGTC CCCCTATGCT 000720 000721 AGATTGTATC TGTGACCCCA GTCTCTCGCC CTTTCCTGTG CCCGAGGCCA GCCACGACTT GCTGTCTTGG GAATGCACCC 000800 000801 AGCCAAGATC AGTCAAGCAG AGCCCAGACA CATAAGCAGG AAAAGCTGAC TGTTGTGCAC CACGGAGACT GTGTAGATAC 000880 000881 GTGTTAATTT GCGTTTCTTC TTATGGCAGC ACCCTCCTTC ACAGAGCCTG CTTCTGTATT AGTCAGGACA GGCCAGGCTG 000960 000961 TATTGTGGTA GCAGTCGGAA CCCCCAAACC CAGCTGCTGC CAAGAGAGCA GGCACCGGGG GCCCGAGTGA TGGGGACTTG 001040 001041 GTGGAGCTGG AGCAGCAAAC TTGCTAAAAT CACTCCTGGT GACCTGGCAG GCTGAATACA AGAAGGCTCA GCCAGGAGCA 001120 001121 CAAGGGGCGA AGTGGGAAAA CACCACATTG CGAGTTTTGT GTTAGGTCCC GCAACACGAG ACGGAGACCA GCTTGAGAAA 001200 001201 GAAGGCCCAG CTTACAAGCA GAGATGAAAG TGAACAGAGA GATGGATCCA GAAATTCAGA GCACCGCAAG GGCAGAAAAA 001280 001281 CCAACTGCTC CAAGAGTTAG GATTTTAACA AGCTTTGGGA GACAAAGGCC CAATAAAATG CCTGACTTGG ACCGATCAAC 001360 001361 AGAAGACAAA GATGGGATTA AGGCCCATTC AAGTCTGAGA GCCTTCTGAC AGCTGCCATT GAGTTGATGG AGAGGAATGA 001440 001441 GAGCAAATAC ATCCTGAAAC TTCAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT017507_smProtein_1223:1408 |
Length | 62 |
Molecular weight | 6981.8717 |
Aromaticity | 0.0327868852459 |
Instability index | 60.0344262295 |
Isoelectric point | 10.137512207 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0336639160168 |
Amino acid sequence | MKVNREMDPEIQSTARAEKPTAPRVRILTSFGRQRPNKMPDLDRSTEDKDGIKAHSSLRA F |
Secondary structure | LLLLLLLLHHHLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLEELLLLLLL L |
PRMN | - |
PiMo | - |