NONHSAT017507

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT017507

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1478 nt

Genomic location

chr11-:2349979..2399222

Exon number

3

Exons

2349979..2350922,2356141..2356249,2398816..2399222

Genome context

Sequence
000001 GGCAGGAATC CGCGGCCAGG GACCCGCGCA GGCCCCTCCT TAGCTGAGGG GCGGCCGGGT ACTCGGGTCC CGACCCGCGA 000080
000081 CCACCGCACC CATCACCACC ACAGCGGGAA CTGCCCGGCG GCCCCCAGAA GCCCCGGCCC GGCCGCAGAG GTGGGCCCCC 000160
000161 GAGCACAGAG GCCCCGAAAC TCGGCTCGCA GCCCTCAGCC CCAATGTCGG GGGGCGCGGT GGCCCCGGGC GACCCCCCAC 000240
000241 CCCGCTCCTG GAGCCCACAG GTGGCCCCAC AACTTCGCGG CCCGCGCTGC GCCCGCGGGG CCTAGCACGC TGCCGCGGGA 000320
000321 CCTGCCCAAC GTGGAGTGTG TGCCTGCCCC CTCCCGCCCC GGCCCCCGGC GCAGCCCTTA CCCAGAAGAC GAAATTGAAG 000400
000401 ACGAAGAGCA GGAATATATT CAAGCAATTA TGAGAACTTA TACAAAAAAA GCTATAAACT CTACTGAGAG ACATGAGAAA 000480
000481 AAACATGAAT CAGCGGAGAG AGAAGCTATT TTCCTTCATG GAGGAAGAAA CAGTGTGGTG AACACATGGT ATCGTCTGTT 000560
000561 CCGCCATCCA CCCCTCTGTT GACCTGCCAA AGTCCACCCA GTCACTACAC CCTCTCCAGA CCCAGCATCT CCGATGGATG 000640
000641 AGCACATCAG GTTTGGATAT GCCCTCTCTT GGTCCAGCAC CCTATGAATT TAAACATTGA GTTATCTGTC CCCCTATGCT 000720
000721 AGATTGTATC TGTGACCCCA GTCTCTCGCC CTTTCCTGTG CCCGAGGCCA GCCACGACTT GCTGTCTTGG GAATGCACCC 000800
000801 AGCCAAGATC AGTCAAGCAG AGCCCAGACA CATAAGCAGG AAAAGCTGAC TGTTGTGCAC CACGGAGACT GTGTAGATAC 000880
000881 GTGTTAATTT GCGTTTCTTC TTATGGCAGC ACCCTCCTTC ACAGAGCCTG CTTCTGTATT AGTCAGGACA GGCCAGGCTG 000960
000961 TATTGTGGTA GCAGTCGGAA CCCCCAAACC CAGCTGCTGC CAAGAGAGCA GGCACCGGGG GCCCGAGTGA TGGGGACTTG 001040
001041 GTGGAGCTGG AGCAGCAAAC TTGCTAAAAT CACTCCTGGT GACCTGGCAG GCTGAATACA AGAAGGCTCA GCCAGGAGCA 001120
001121 CAAGGGGCGA AGTGGGAAAA CACCACATTG CGAGTTTTGT GTTAGGTCCC GCAACACGAG ACGGAGACCA GCTTGAGAAA 001200
001201 GAAGGCCCAG CTTACAAGCA GAGATGAAAG TGAACAGAGA GATGGATCCA GAAATTCAGA GCACCGCAAG GGCAGAAAAA 001280
001281 CCAACTGCTC CAAGAGTTAG GATTTTAACA AGCTTTGGGA GACAAAGGCC CAATAAAATG CCTGACTTGG ACCGATCAAC 001360
001361 AGAAGACAAA GATGGGATTA AGGCCCATTC AAGTCTGAGA GCCTTCTGAC AGCTGCCATT GAGTTGATGG AGAGGAATGA 001440
001441 GAGCAAATAC ATCCTGAAAC TTCAAAAAAA AAAAAAAA
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Predicted Small Protein

Name NONHSAT017507_smProtein_1223:1408
Length 62
Molecular weight 6981.8717
Aromaticity 0.0327868852459
Instability index 60.0344262295
Isoelectric point 10.137512207
Runs 7
Runs residual 0.0380629357452
Runs probability 0.0336639160168
Amino acid sequence MKVNREMDPEIQSTARAEKPTAPRVRILTSFGRQRPNKMPDLDRSTEDKDGIKAHSSLRA
F
Secondary structure LLLLLLLLHHHLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLEELLLLLLL
L
PRMN -
PiMo -