NONHSAT017779

From LncRNAWiki
Revision as of 20:25, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT017779

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

4472 nt

Genomic location

chr11-:7458868..7487066

Exon number

5

Exons

7458868..7462950,7471604..7471673,7479027..7479190,7482470..7482567,7486984..7487066

Genome context

Sequence
000001 GTAAGAAGTG CCTTTTGCCT CCTGCCATGA TTCTGAGGCC TCCCCAGCCA TGTGGAACTG GCTCAGTGTG GTCAAAAGAA 000080
000081 GACTATAGAA TCAAGGATGA AGAGAAGGAA CACAGAATAA AAGGACGTCT CAGCAGGAAG CTCTGTGACT ACTATGTAAT 000160
000161 TCTTACAATA CAGCAAATGA TGCCATACAG TGAAGCACCT TGAAAGATTG CTGGGATAAG CTGACAGCAT GGCAGCCAAA 000240
000241 ATAGTGACCC CAGGCTTGCA GGAATTCTGT GCTTTCTGGA GGAAATGGTC ATGGGTTTCC CAACCTGCCT TTTAAACTAA 000320
000321 GGACCGAGCT GAAGAAGCCC CCGTCTTCCA GCGCATGTTA TTCCCATGAC AGATGCTAAA AGTTCAAGGG GAGAGCTACA 000400
000401 AGAAGTGCGT TTTCCTGTGG CTACTTTCAT GTCTGGATGC AATGCCTAGA CCTGCATCCA TCTTGCGACC AACCTGAAGA 000480
000481 TGAACAGAAA GGAAGGAAGG ATGGCCCAAT AGCCTGGGAA GAACTGGTGT TCCTGATACC ATCATTAACC ACAGAATCTA 000560
000561 CAATCCCGGA ACCCCCCATC CTTAACCATG GAATCTACAA TCCTATCTCT AGACCCTTTG TCCAGATGCT ACAGTTTCTT 000640
000641 TGTTCAATCT AGTTTGTGTC AGGATTTCTG TTCATTACAT CAAAAGTATT CTAATACTTG TAGCAAAGCA ACTGGAGAAG 000720
000721 TTTTCACTTT GTCTTTAACC AAAGAAGACT TCCAGGAAAC ATCTCCTCAG TGGGTTTCTC CCTCACCACT GGATTTTTAT 000800
000801 CTCTGTACTA GTGCTTTGAT TTGTTTTAGG AGTCTCACCT CTCCACCTGT CATATTTCCC TGGCAGGCTC ATTTCTGCTA 000880
000881 ATGCCCACAA TATGTGTATC AATGAGCTTT CAACGTTAGG TACACAGCTC TTCAGGCATG TATAGCACAT TAATCTGTCT 000960
000961 GCTTCTAAGT GGTCTGTTGA CATGTTTGGG TGCCAGTTAT ATCTACAAGG CTGTGATCAT TGTCCTGGGT TATTCTGTTT 001040
001041 GTTCTCTCTG CAGGATGCAT TAGGACACCC AAGGCCATGG CCATCACTTA CATCTAGGAT TCAATCTTAT CTCCTGTGAA 001120
001121 TCACTGGAAA CCTCCTGTCC TGGAACCCTT TTTTTCCACA TCCCACTGGA TGTCATTCAT AGCAACTGGT CTTGTGGGTT 001200
001201 GTCTATTTTA TTGTGTTGTC TTACTCTTCC TCCTGGTATC AGTTTTTAAA TCCTCTTGAT GAGATCAGCT GATCAGTCGC 001280
001281 TAAGCAACAT AGTCCCCCAT GTCTTTGTAA GATTCTCTGC ACTCATGGCT AGAATGATTT ATTCTGGTAT CTTAAGCTGT 001360
001361 GTTTCAGAAC CTCATTCTAA ATATCAACCT ATTCTTGTAA GTCCACTACT GATCATCTTT AGATATTCTT CAGTCTTCCA 001440
001441 GAGTTCCAAA GGGCAGTAGG AAGAAGCAAT GAAAATACCA CCTGTATTCT CACATCTTTC ATTGTTCCAC TCAAAAAATA 001520
001521 CCACCATGTT CACTTCTGGT GGAACGTTTA TGTCCATGAG AAGCAGTGGC TTTGAAGAGT TTTGGCAGAC TATGGCGCCT 001600
001601 TACTCAACAT TGGGAAGGTA TCTTGCCATC AGACCTTTTG GGTCTCCATG AAACTTCTTA TACCCCCTCT GGGAAAAGTC 001680
001681 ACTAACTGTG ATCTTACTGA GCTTCTAAAC ACAGCATTTT TTTTACACTT AAGTGAGCGG GGGTCCTCCT CATTTGTGCT 001760
001761 TCTCTTCTTG TAAGGGTGAC TTCCTCCCAG TAGGATGAAT CTCATGCCTA TTTGTGTTAT TTTGCTAATT CCAGCTTCTT 001840
001841 TTCTACTCAG GGGGGTTCCA ACTCTTTTAA GGTCTCATCT TCAGCACTTC TAAACTGTGG GAAACTATGT GAAAACAAAT 001920
001921 GGAGTGGCCA AACACACCAT TCATCACTGT GCTTCTGGAC AGCTGCAAGT CCATACGTGT TCTGGTGAGT CTTCAGGTTG 002000
002001 TACGGGAACA GAGGCTGAAT CAAGGCAGTT CAGTGAGAGT CTAGATGGGA GTGCTTATGG TGTTCTATAA TAAAGTACTT 002080
002081 ATGGAACAAT AATAGAAATG GATTCTTAGA GAAGCCCAAG AGAAGGAACT ATGATTGCCT CATTTCCCTG ACATTTCTAA 002160
002161 GTTTGGTGGC ATAATCTAAT TGACCCAACC CACCTTGGGG TGCCAGGCCA TGTCATAAGT CACTGGACAG CCCATAAACA 002240
002241 GCTTTCTGGG AGCATGTCCC CATCTTGATC CAATCACCTG TGGCCAGGAC ATTTTACAAA CCTCGGTGGT TAGGGCTGCT 002320
002321 TGTTCAACAG ATATTAGGGG TGAAGTTGTA CATGCATGCA GGGGAGGCTG AGATGGTAGG CACCGTGAAT AACATGTTCC 002400
002401 AGGGTGGGCT CTGCCTCTTG TCTGCTCTGT AACATACCCC TGCTTCCTTG TCCTGACCTC TCATTTGCTA AAGTCTGATT 002480
002481 TCCAGCTTTG AAGTCTCTGC TCAATCTCTC CAGCCTTCTG CTCATGTCTT CACCTCCTAC CTTGCAGCCT GTCTTTTGAC 002560
002561 TTGATGTTGC TTGACTGCAA TTCCTGTGAC TTGGCCTTGG GGTCCACTCC CATGAAATGC TTCTCTGGCA GCCTTGGCAG 002640
002641 GTGTGTCCCA GTGTTCCTGA GTTCCAGTGT TCCTGGCTGT GTCCTTGCAC CAGAGCAGGC TGCTTGAGAT TAGACACGCT 002720
002721 CCTCCCTCCT ATCAGTCCAC CTTGGCTCTG ACACTTTCCT CAGCCTCCTT TTCTTTGTCT GCTGGAGCAC AGCAAAGTTT 002800
002801 CCCAGAAGGT TTAAATTTAC ATTCTTGGTC AAGGTCTCAC ACCATCATGA CACTGAAGCA GATAGAGTGA CTTCCTTCTC 002880
002881 TTCTAAGCTG TGTGCATGCC TCCATGCCCC TACTAGTTTG TATAATTCCA GTTTCTATAA TTTCTTCCAT TCTTTCCTGA 002960
002961 AACTTTGTGC TTTCTGTTAA AGTAGGTTTT TAGGGATATT TTTCAGGTCG GTTCATCCCT CTGAATGTCT TGGGTTTGTC 003040
003041 TGATTGAAGC CAAATGGACA CAGTGAGTGT TTCCTTTCTG AGTGGAGGGA GGTGGCTCTT GCATCACCTT TGGGTCCTTT 003120
003121 AGAGCTTTAG AGTAAATGCT CAAAGACTGC CCACAGCTGG ATTTGCTGGC TGTGAATTAG ATCTGGGAGG AGAGGACTTA 003200
003201 GCAGGAAAAA GCTTCTGTAT CTAATGCTGA AATCAGAGAT GAAGTCTGAA CAGAAGTGCG ACATCCAAGA GTCAGGGGCG 003280
003281 GGATGTAGGA GGTGCATGGG ATGACAGGGG CGGGGCTCTG ATCTGAGAAG GGCAGTTTCA ATGTGCACAG CAGAGCACTG 003360
003361 GGGAGGGGAT GTGTTGTTCC ATACAAGCTG ATGGAAGTTG ATAGAAGAAT AGGAACAAGG CTTGGATGGT GGCAAAAGAC 003440
003441 CTACCTGCAC CAATGTGAAA AAAGGGGCCC TTTCAAGGCT GAGCCAGGTT GGAAGAGGGC AGAGCTGCTT CCAGGACACC 003520
003521 AGAGAGTGCA GCAAGTATGC AGAGAAAACC TGGGCACCAA GAGACCTGGG AGAGAGGAGG CAGATGGGTG GGCCAAAGTT 003600
003601 CTGGTAGTTG GGAAAGGTGA TAGAAAGCAC TGCATTAATG CTGGGTCCTC TGCCCTTGTA CTAAGAGCAG CACATGGCTG 003680
003681 CCTCTGAATC CTGCCCATGG AGTAACATTT GCTTCCATAT GCCACAAAGA TGAGATGGGG CCCTGATGTG CCTGTTATAG 003760
003761 GAGGGCAGAG CATCCTGTGT GCTCTGTGAG AAGAGCTGGG CCACGTATCT CCAGGTCAAA GCCCGCACAG CAGTTATCCC 003840
003841 CTCCCTCTCT TGTATCTTCA ACCTTTCCTT TCCTATTGGG AAGGATTTCC GTATTTCCAA GAGCCTGCTC AAGTGGGGTC 003920
003921 AGCATGTGTC TCTGGTCACC ACCCTCTCCC CTGTGGAAGG CTGACAACTC TCCCATCTAT ACAAAATTTG AAACCACCAA 004000
004001 TTATATGATT GACACTATTA CACTGGAACA ATTTCCTGTC AGACTCCCCC ACCAGACTCT TTACAGGCCG GTGCTTCATC 004080
004081 TACATCTCTC TGTCCACAGC ACTTGGTGTA GTATTCGCAA CCTAGCAGGA ATGAAAGAGT CCGTGTGGAG TCAAGCACCT 004160
004161 CAGGGAACCC CTTGAAAGCA GTGACACATA CCTCCAACAA GAATTGCCTC TTCCTTCCTT CTGTGGCTTT GCACAGCATT 004240
004241 TTTCTTTAAT TATAAACACA GTTGGTCTCT CTATGCTGTT TAGGCTAAGC ACAGCACAGC TTCAAACTGG AAGGTTAAAT 004320
004321 ATTTGTGGTA AAAATAACTT ATTTGTGCCC ATGCAAATGT GGCAACACAA ACTCAGGCAT GTAGTGTTCT ATGCAGAGAA 004400
004401 GCTAAAACCA AGGAATGACA TTAATTTCCG GTGAAAATAT GTGATGACAA TCTTAGAATT CTGGCTTTTC AG
[back to top]

Predicted Small Protein

Name NONHSAT017779_smProtein_587:880
Length 98
Molecular weight 11021.4553
Aromaticity 0.144329896907
Instability index 58.8712371134
Isoelectric point 5.04107666016
Runs 17
Runs residual 0.0437189767087
Runs probability 0.0451385641697
Amino acid sequence MESTILSLDPLSRCYSFFVQSSLCQDFCSLHQKYSNTCSKATGEVFTLSLTKEDFQETSP
QWVSPSPLDFYLCTSALICFRSLTSPPVIFPWQAHFC
Secondary structure LLEEEELLLLLLLEEEEEEHHHHHHHHHHHHHHHLLLLLLLLEEEEEEEELLHHHHLLLL
LEELLLLLLLLHHHHEEEEELLLLLLLLLLLLLLEEL
PRMN -
PiMo -