NONHSAT017779
Revision as of 20:25, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017779 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
4472 nt |
Genomic location |
chr11-:7458868..7487066 |
Exon number |
5 |
Exons |
7458868..7462950,7471604..7471673,7479027..7479190,7482470..7482567,7486984..7487066 |
Genome context |
|
Sequence |
000001 GTAAGAAGTG CCTTTTGCCT CCTGCCATGA TTCTGAGGCC TCCCCAGCCA TGTGGAACTG GCTCAGTGTG GTCAAAAGAA 000080
000081 GACTATAGAA TCAAGGATGA AGAGAAGGAA CACAGAATAA AAGGACGTCT CAGCAGGAAG CTCTGTGACT ACTATGTAAT 000160 000161 TCTTACAATA CAGCAAATGA TGCCATACAG TGAAGCACCT TGAAAGATTG CTGGGATAAG CTGACAGCAT GGCAGCCAAA 000240 000241 ATAGTGACCC CAGGCTTGCA GGAATTCTGT GCTTTCTGGA GGAAATGGTC ATGGGTTTCC CAACCTGCCT TTTAAACTAA 000320 000321 GGACCGAGCT GAAGAAGCCC CCGTCTTCCA GCGCATGTTA TTCCCATGAC AGATGCTAAA AGTTCAAGGG GAGAGCTACA 000400 000401 AGAAGTGCGT TTTCCTGTGG CTACTTTCAT GTCTGGATGC AATGCCTAGA CCTGCATCCA TCTTGCGACC AACCTGAAGA 000480 000481 TGAACAGAAA GGAAGGAAGG ATGGCCCAAT AGCCTGGGAA GAACTGGTGT TCCTGATACC ATCATTAACC ACAGAATCTA 000560 000561 CAATCCCGGA ACCCCCCATC CTTAACCATG GAATCTACAA TCCTATCTCT AGACCCTTTG TCCAGATGCT ACAGTTTCTT 000640 000641 TGTTCAATCT AGTTTGTGTC AGGATTTCTG TTCATTACAT CAAAAGTATT CTAATACTTG TAGCAAAGCA ACTGGAGAAG 000720 000721 TTTTCACTTT GTCTTTAACC AAAGAAGACT TCCAGGAAAC ATCTCCTCAG TGGGTTTCTC CCTCACCACT GGATTTTTAT 000800 000801 CTCTGTACTA GTGCTTTGAT TTGTTTTAGG AGTCTCACCT CTCCACCTGT CATATTTCCC TGGCAGGCTC ATTTCTGCTA 000880 000881 ATGCCCACAA TATGTGTATC AATGAGCTTT CAACGTTAGG TACACAGCTC TTCAGGCATG TATAGCACAT TAATCTGTCT 000960 000961 GCTTCTAAGT GGTCTGTTGA CATGTTTGGG TGCCAGTTAT ATCTACAAGG CTGTGATCAT TGTCCTGGGT TATTCTGTTT 001040 001041 GTTCTCTCTG CAGGATGCAT TAGGACACCC AAGGCCATGG CCATCACTTA CATCTAGGAT TCAATCTTAT CTCCTGTGAA 001120 001121 TCACTGGAAA CCTCCTGTCC TGGAACCCTT TTTTTCCACA TCCCACTGGA TGTCATTCAT AGCAACTGGT CTTGTGGGTT 001200 001201 GTCTATTTTA TTGTGTTGTC TTACTCTTCC TCCTGGTATC AGTTTTTAAA TCCTCTTGAT GAGATCAGCT GATCAGTCGC 001280 001281 TAAGCAACAT AGTCCCCCAT GTCTTTGTAA GATTCTCTGC ACTCATGGCT AGAATGATTT ATTCTGGTAT CTTAAGCTGT 001360 001361 GTTTCAGAAC CTCATTCTAA ATATCAACCT ATTCTTGTAA GTCCACTACT GATCATCTTT AGATATTCTT CAGTCTTCCA 001440 001441 GAGTTCCAAA GGGCAGTAGG AAGAAGCAAT GAAAATACCA CCTGTATTCT CACATCTTTC ATTGTTCCAC TCAAAAAATA 001520 001521 CCACCATGTT CACTTCTGGT GGAACGTTTA TGTCCATGAG AAGCAGTGGC TTTGAAGAGT TTTGGCAGAC TATGGCGCCT 001600 001601 TACTCAACAT TGGGAAGGTA TCTTGCCATC AGACCTTTTG GGTCTCCATG AAACTTCTTA TACCCCCTCT GGGAAAAGTC 001680 001681 ACTAACTGTG ATCTTACTGA GCTTCTAAAC ACAGCATTTT TTTTACACTT AAGTGAGCGG GGGTCCTCCT CATTTGTGCT 001760 001761 TCTCTTCTTG TAAGGGTGAC TTCCTCCCAG TAGGATGAAT CTCATGCCTA TTTGTGTTAT TTTGCTAATT CCAGCTTCTT 001840 001841 TTCTACTCAG GGGGGTTCCA ACTCTTTTAA GGTCTCATCT TCAGCACTTC TAAACTGTGG GAAACTATGT GAAAACAAAT 001920 001921 GGAGTGGCCA AACACACCAT TCATCACTGT GCTTCTGGAC AGCTGCAAGT CCATACGTGT TCTGGTGAGT CTTCAGGTTG 002000 002001 TACGGGAACA GAGGCTGAAT CAAGGCAGTT CAGTGAGAGT CTAGATGGGA GTGCTTATGG TGTTCTATAA TAAAGTACTT 002080 002081 ATGGAACAAT AATAGAAATG GATTCTTAGA GAAGCCCAAG AGAAGGAACT ATGATTGCCT CATTTCCCTG ACATTTCTAA 002160 002161 GTTTGGTGGC ATAATCTAAT TGACCCAACC CACCTTGGGG TGCCAGGCCA TGTCATAAGT CACTGGACAG CCCATAAACA 002240 002241 GCTTTCTGGG AGCATGTCCC CATCTTGATC CAATCACCTG TGGCCAGGAC ATTTTACAAA CCTCGGTGGT TAGGGCTGCT 002320 002321 TGTTCAACAG ATATTAGGGG TGAAGTTGTA CATGCATGCA GGGGAGGCTG AGATGGTAGG CACCGTGAAT AACATGTTCC 002400 002401 AGGGTGGGCT CTGCCTCTTG TCTGCTCTGT AACATACCCC TGCTTCCTTG TCCTGACCTC TCATTTGCTA AAGTCTGATT 002480 002481 TCCAGCTTTG AAGTCTCTGC TCAATCTCTC CAGCCTTCTG CTCATGTCTT CACCTCCTAC CTTGCAGCCT GTCTTTTGAC 002560 002561 TTGATGTTGC TTGACTGCAA TTCCTGTGAC TTGGCCTTGG GGTCCACTCC CATGAAATGC TTCTCTGGCA GCCTTGGCAG 002640 002641 GTGTGTCCCA GTGTTCCTGA GTTCCAGTGT TCCTGGCTGT GTCCTTGCAC CAGAGCAGGC TGCTTGAGAT TAGACACGCT 002720 002721 CCTCCCTCCT ATCAGTCCAC CTTGGCTCTG ACACTTTCCT CAGCCTCCTT TTCTTTGTCT GCTGGAGCAC AGCAAAGTTT 002800 002801 CCCAGAAGGT TTAAATTTAC ATTCTTGGTC AAGGTCTCAC ACCATCATGA CACTGAAGCA GATAGAGTGA CTTCCTTCTC 002880 002881 TTCTAAGCTG TGTGCATGCC TCCATGCCCC TACTAGTTTG TATAATTCCA GTTTCTATAA TTTCTTCCAT TCTTTCCTGA 002960 002961 AACTTTGTGC TTTCTGTTAA AGTAGGTTTT TAGGGATATT TTTCAGGTCG GTTCATCCCT CTGAATGTCT TGGGTTTGTC 003040 003041 TGATTGAAGC CAAATGGACA CAGTGAGTGT TTCCTTTCTG AGTGGAGGGA GGTGGCTCTT GCATCACCTT TGGGTCCTTT 003120 003121 AGAGCTTTAG AGTAAATGCT CAAAGACTGC CCACAGCTGG ATTTGCTGGC TGTGAATTAG ATCTGGGAGG AGAGGACTTA 003200 003201 GCAGGAAAAA GCTTCTGTAT CTAATGCTGA AATCAGAGAT GAAGTCTGAA CAGAAGTGCG ACATCCAAGA GTCAGGGGCG 003280 003281 GGATGTAGGA GGTGCATGGG ATGACAGGGG CGGGGCTCTG ATCTGAGAAG GGCAGTTTCA ATGTGCACAG CAGAGCACTG 003360 003361 GGGAGGGGAT GTGTTGTTCC ATACAAGCTG ATGGAAGTTG ATAGAAGAAT AGGAACAAGG CTTGGATGGT GGCAAAAGAC 003440 003441 CTACCTGCAC CAATGTGAAA AAAGGGGCCC TTTCAAGGCT GAGCCAGGTT GGAAGAGGGC AGAGCTGCTT CCAGGACACC 003520 003521 AGAGAGTGCA GCAAGTATGC AGAGAAAACC TGGGCACCAA GAGACCTGGG AGAGAGGAGG CAGATGGGTG GGCCAAAGTT 003600 003601 CTGGTAGTTG GGAAAGGTGA TAGAAAGCAC TGCATTAATG CTGGGTCCTC TGCCCTTGTA CTAAGAGCAG CACATGGCTG 003680 003681 CCTCTGAATC CTGCCCATGG AGTAACATTT GCTTCCATAT GCCACAAAGA TGAGATGGGG CCCTGATGTG CCTGTTATAG 003760 003761 GAGGGCAGAG CATCCTGTGT GCTCTGTGAG AAGAGCTGGG CCACGTATCT CCAGGTCAAA GCCCGCACAG CAGTTATCCC 003840 003841 CTCCCTCTCT TGTATCTTCA ACCTTTCCTT TCCTATTGGG AAGGATTTCC GTATTTCCAA GAGCCTGCTC AAGTGGGGTC 003920 003921 AGCATGTGTC TCTGGTCACC ACCCTCTCCC CTGTGGAAGG CTGACAACTC TCCCATCTAT ACAAAATTTG AAACCACCAA 004000 004001 TTATATGATT GACACTATTA CACTGGAACA ATTTCCTGTC AGACTCCCCC ACCAGACTCT TTACAGGCCG GTGCTTCATC 004080 004081 TACATCTCTC TGTCCACAGC ACTTGGTGTA GTATTCGCAA CCTAGCAGGA ATGAAAGAGT CCGTGTGGAG TCAAGCACCT 004160 004161 CAGGGAACCC CTTGAAAGCA GTGACACATA CCTCCAACAA GAATTGCCTC TTCCTTCCTT CTGTGGCTTT GCACAGCATT 004240 004241 TTTCTTTAAT TATAAACACA GTTGGTCTCT CTATGCTGTT TAGGCTAAGC ACAGCACAGC TTCAAACTGG AAGGTTAAAT 004320 004321 ATTTGTGGTA AAAATAACTT ATTTGTGCCC ATGCAAATGT GGCAACACAA ACTCAGGCAT GTAGTGTTCT ATGCAGAGAA 004400 004401 GCTAAAACCA AGGAATGACA TTAATTTCCG GTGAAAATAT GTGATGACAA TCTTAGAATT CTGGCTTTTC AG |
Predicted Small Protein
Name | NONHSAT017779_smProtein_587:880 |
Length | 98 |
Molecular weight | 11021.4553 |
Aromaticity | 0.144329896907 |
Instability index | 58.8712371134 |
Isoelectric point | 5.04107666016 |
Runs | 17 |
Runs residual | 0.0437189767087 |
Runs probability | 0.0451385641697 |
Amino acid sequence | MESTILSLDPLSRCYSFFVQSSLCQDFCSLHQKYSNTCSKATGEVFTLSLTKEDFQETSP QWVSPSPLDFYLCTSALICFRSLTSPPVIFPWQAHFC |
Secondary structure | LLEEEELLLLLLLEEEEEEHHHHHHHHHHHHHHHLLLLLLLLEEEEEEEELLHHHHLLLL LEELLLLLLLLHHHHEEEEELLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |