NONHSAT018167
Revision as of 20:27, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018167 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1843 nt |
Genomic location |
chr11-:15987996..15989841 |
Exon number |
1 |
Exons |
15987996..15989841 |
Genome context |
|
Sequence |
000001 ACAAAAATGG TTGCTGTAGC CCTGCCTGAT TTTGTACACG TTTGTCTAAG AATTGAGTTG GCACTTAAGC TCACTTCTCA 000080
000081 AAGTATAATA ATATTGTATG ACCTCATTTG TCCTTTCACA AAAGCACTTG CATCATTTCC TTAAGTCATC TGCTCCCTGA 000160 000161 CATGTTTTCT TCCCTAATAA ACAACTTCTG TCTGTTATTC CTGCCAATGA TGTTCTGTTT CTGATGCCAT ATCCTATTGA 000240 000241 GCGTGCCCCT GTACTAATAT CATTGAAAAT ATTGATATGC AAACACATTT CCTTTTCATC CCCATTCTAT CTTTCCCTTT 000320 000321 GGGGACAGAT TGCTTTCCAA AAGCTCATGA ACAAATATTT GGAATGCTGG TACCTTTGGG GCAGAGGTAA GGGTGGGCGG 000400 000401 GGTGGGGGCA GAAAGGTAAT GCTTAATGCA GATAACTCTT CTAATCAGTG TCCATGGCAA TATGAACGCT TGAAGAAAAC 000480 000481 TCAGTGACAT ATCTTGCTCA GTAGTTTCTT ATTCCTGAAG AACCACAAGC ATAAAGTGAG GCCTCAGTGC TGGTGCTCTT 000560 000561 GGAGTATGGG GAATGTGCAA ATATTTAACT GTTTTGTATG CTGCACATTG CAGGTCTGCT CATGTGCATT CTCCCTTTGT 000640 000641 CTTCCTTTGT CATATGTGTT TTTGCTTTTT TGAAAGTGCA GTCTTTATTG TACCCTCCTC CAGCTTGTAG CAAATTAGAA 000720 000721 TGCTTAGCAT TTATGTTCAT TCATTATTGT ATTTGCCATG TAAAATTTTT ATTACCTTAG ACAAGCTTAT AAGCTGTTAC 000800 000801 TACATAACTT ATCTTACTGT AACTCTTTTA TTTCCCCCGA CGTTGTAATT TGTTTGTGAT GTATATTGTG AAATTGTATT 000880 000881 CTATGTTAAT TTAATCAGCA CAATTCACTG ACATGCTGGA CTGACATGCT GGCTGCTGTT TCAAAGTGTA AAGTTTGTGT 000960 000961 AGGGCTGTTG GGACAACTGC AACTCTGTTG TCAAGGTACT GTGCTTTGGT TCCTATAGCA ACACTGGGTG TGGCCCTTGA 001040 001041 ATTGCTAAGG GCATTTAATA CATCCTGGAG CAAATTTTAA CTGCAGATTT TCTTTGTAGA AATTCTATGT ATAATGCAGG 001120 001121 TACCTACTTG GCCCATGGCT GGTAACTATT TGGGCAATTA GAAAAAAAGA AAAAAACATA AAAACTAGTG TCTATTGCTG 001200 001201 CTTTGAATAT GTTTGAAAGT CTGAAAATGT AAATAGTTTA TCAAAAAAAA ATCTTGTACA GTCCAGTGTA AAGTTTTTAA 001280 001281 ATGACCTTAA GGGTTGCCAT CACATCTTTC TCACACTCTC CTCTTGATAA TAATAATAAA AAGTTTGCTA AGGATTAAAG 001360 001361 AAATGGGAAA AATAAAAAAA ATCTCTTCAA ATTTACAGGA ATGAATCATT GTTCTTAGCT TTGTTGCATA CACAAACTTC 001440 001441 TTGGATTTTG TTGTGCAGTA TTGACGTGAG ATAAAGCTCA ACATTGAATA ATCTTTCAGT GGTACTTTTC AAAGTCTTCC 001520 001521 CCTCCTCTGC CTCATAATTA AGGGAAAAGA CAAAATTGAA AGACACACTG TCTTTATCTA TCCTGGTGTA TGTTGGCACC 001600 001601 TTAGCTACTT TTTTTTTTTC CTTTTTGCAC AAGGTGCTTT CCTGATATGT TCAACATGCC ATCTTTGGGT GATAATGTAT 001680 001681 ATGCCGTGAT GGGGCTCAGG CCCCTTAGGG GAGTGTCTAT AAGAACTGCC TATTTATGCT CATTTACCTC AAGACTGTCC 001760 001761 TCTCTACCCT AATCTAGTTG TCATCACTCC ATCTTTTGTA CTGCTGTTGA CACTTACAAA TTAAAGATAA ATTTTGTTTT 001840 001841 ATG |
Predicted Small Protein
Name | NONHSAT018167_smProtein_572:709 |
Length | 46 |
Molecular weight | 5131.0929 |
Aromaticity | 0.177777777778 |
Instability index | 61.8333333333 |
Isoelectric point | 7.68865966797 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0587856764329 |
Amino acid sequence | MCKYLTVLYAAHCRSAHVHSPFVFLCHMCFCFFESAVFIVPSSSL |
Secondary structure | LLHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHLLEEEEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooo |