NONHSAT018224

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT018224

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3256 nt

Genomic location

chr11+:17353589..17371521

Exon number

3

Exons

17353589..17356027,17358895..17359081,17370892..17371521

Genome context

Sequence
000001 AACAGAAAAA ACAAAGATAA CAGTGGTTTA AACTAAATAG GAGTTTTTCT TCTTACATAA GTCTAGAAGT AGGTGGTGTC 000080
000081 CAGGTTCCTA TCTTTCTGCT CTGCTATCCT CAGTGCATGA TTTTTATCCT CAGATTACCT CACTCTCACT GTTCAAGTTT 000160
000161 GCTCCTGGAG GCAGTGGGGA AGGCAAGAAA ACTGGACTTT CTCTGCTTGA GTTAGCTTCC CTGAGGCCAT TTTCCAGAAC 000240
000241 CAGCAGCACC TGAACTTATG TTTCGACCAG AACTGGGTCA CACTGATGGC CACACCTAGC TGCTAGGGAG GCTGAGAAGT 000320
000321 CAATGTGGCA ATGTGACCAG CTAAAAGTTG GATTCTTTTA CTAAGGAAGA AGGGAAGAGG GAATGTTTGG TAGGCAACTT 000400
000401 TGGATTTTAA ACTCAGCCAG CCTTGTTGGC TACCTAAATT CTGTGTACCT TCTTCTTCCG AGAGAGAAAA CACTCACCCC 000480
000481 TCTCTCCCTG AAGAGAAACC ACCAGAAATC CAGCCCATTA TTGCATACTA GATGAAAGAC CATGCTATCT GGAGACAGTC 000560
000561 CCCTCCATCA TGTTAGGGTG TGGCTCCTTG TGTTCTGGCC ACCTACAAAC TGAAAGACAA GTTTTCTGCC CTGAGAGCAC 000640
000641 CAGATGCATA ATGCAAAGGT GCAGGAAAAC TGACCTTTTA AATTTTTTAG AGACAGGGTC TTACTCTGTT GTCCAGTCTA 000720
000721 GAGTACAGTG GTGTGATCAT AGCTTACTGC AGCCTTGAAC TTCTGGGCTC AAGTGATCCT TCCACCTCAG TCCCCCTAGT 000800
000801 AGCTAGGACT ACAGGCACAT GCCACGAACG CCTGGCTAAA CATTTTTTTT TGTAGAGATG GAGTATTGCT ATGTTGCTCA 000880
000881 GGCTGGTCTT AAACTCCTGG TCTCAAGCAA TCTTCTCACC TCAGCCTCCC AAAGCACTGG GATCACTGGT GTGAGCCACC 000960
000961 ATGCCCAAGA TCCCTAAAAT TGACCTTTTA GAAAAAGGGA GAAATAGAAA TATAGTGGCC ACTGATCCAT AGCAATTTGA 001040
001041 AAGTACCACT TGGCAAAAAT AATTAAATCT CTCTGCTATA GTTCATGAAT ATATTCCTTG GTTTGCCTAT CAGGCAACCC 001120
001121 CTGATTCACC TTTCTGAGAG GAATTCCTTT ACCTAATGTC CTCAGGGGGC CTTGGTTTTA CTTTCTTGGA GGTTTTTATT 001200
001201 GTACATTAAT TTTCAGACAC AATCTGAATG GGCATTGGAA AGTATACCCT TCTTGGAGGC TGGGCAGCCT TAGCAGTTTA 001280
001281 CTTCCTATAA TTGTGAGTCT GGGGGCAGGC TTGGGAATTA GAGTATAGAT CCGTAACAGC TACAGTCTAT TGCAGGCCAG 001360
001361 GTTTGGGTTT TTGTTGTTGT TTTGTTCTGT TTCTTGGCCA AGTGGATTCC TAAAACTTTA GTAAGTTTCT GGTCTGTTGT 001440
001441 CTTCAGTCAT TTACATGGAC AGTATTAACC AAGGTAAAAT ACATTGTTTT TAACAAAGAA CCTCATCATT TACTTGCTGG 001520
001521 CCTCTGTGTG CTCTCCATCC CCTTTGTTCT TACAGGAATG GTACCTCCTT GAGATCCTTT GAGACTGTAG GCTTGCATGG 001600
001601 AATGGCAACA GTCTTAATCT GATCTCTTCC CCTAGGATGG CTCCTATTAT TTGGCAGAAA ATTCTTAAGG GAAGGTTCTT 001680
001681 AAAAAAGGTT GAGAAAGTTT TAGTAGCTCC CTCAGAGCCT TTACTTATAA ATGTTTCAGT TTGGAGTACA GTTTTCAATT 001760
001761 CTTCAGGGCT CCAGATTTGG GACTTGGTCA ATTTATATGG TAGACAAAGA GCAATTCTCT CAGCAAAGCT ATTTTTCCCT 001840
001841 TGCGTCACTG CAGACTTGTT AATCTTAGTC CAAGTCACAT ATCTCTTGTA GGGCTTTGCT GAAAAGAGGC AAGAAGCAGC 001920
001921 CAACACATGC TAGCACTCTG AAGTTCTACC ACCTTCGTCT CTGTGGCAGG AAGTCTCAAC CTCACCTTGA CTTCTGTTGG 002000
002001 CAAGAAGTCT CACTGCCCAA AGCCCTACCT CCTCAACTAA GCCAACCCCA GATTTAGGGC CTTCGACTTG CTGTGCTTTA 002080
002081 CTTCTAGCTG CCAAATTCTG TATAGGTCAA GATTCTTGGC TGTAAGCAAT GAAATCTTCT TTAGCTATTA AACAGAAGGG 002160
002161 AATTGATGAA TGAGTATATA TAGGTCACAG AATCAATGGG AGGGTTGAAG AAACAGATCT AGGCTGAGCT TCTAGGAATT 002240
002241 ATGTCACAAG AGTAGGCTGC TGAAAGAGCT GCTGCTTTTA GAACAATCAA GAAGCTGCCT GCTGGATTAG GAAGCTGCCT 002320
002321 GCTGAACAGT TGCCAGTTCC AGAGCCACAC CACCTCTGCC ATGCTTTATG CCAGCAAAAA TAGATACATC TCTTCCTGCC 002400
002401 TCTGTCCCCA CGTTACTTGG CTCTGAGTAA AAGTCTCAAC CATGAAGTAC AATCAAGAAG AAATTGAAAA ACAGTCAGAG 002480
002481 TTAGATGATG AGCTTCATCG TTTGTCATGC AGGATTTTTA TCCCCTGAAG AACCTGCTAG AGAAGTCCAC CTTCACCCTT 002560
002561 AACCACTGGT GCCTCAACTT AATACTTTTA AAATTCATTT GTTTCTGTTG GAATTGGGAT ACTAAGGTCC AGAGGTGTCC 002640
002641 TTCTAAAGCT GGTAGAGGTT TCACGAGTCA TCAGGGACCC AGAACCCTTC TCTTTTGCTG TCCCTTTGTC CTAGTGCATG 002720
002721 GTTTCCACAC TGTGGTGCAA GATGTCTCCT CAAGCTCTAG GCATTACATC TGCTATCCTG CTGTCAGAAA GAAGGAAGGG 002800
002801 GAAAAGAAGA TCATTTCCTT CTCTTTAAGG ACATTTCCCA GAAGTCACAC AGAACATTTC CATTTATATT ACTTTGGCCA 002880
002881 GAACTTGGTC ATATGGCCAC ATTTAGTTCC AGAATGATTA GGAAATGCAG TCTTTTATTG ATCCCTGTGC CCAGGAAAAT 002960
002961 ATTGGAGGCC TTTTTCAAGG AAAAAGGGGA AAACAGATAT TGGTTGACAA ATAGCAGTCT CTGCCATACT GTCCCTGGAT 003040
003041 ACATGTCTTT GAGTGAATGT CCCTTATTTA CCATTCTGAT TACTTGTTGG ATATTTTCAA TATGTGTTAC AATATGGTTC 003120
003121 CAAAATTGTA TGTGATATTC CAACAGCAAG TTGGATGCAA TGTGTCATAA AAATGACCTC AGTGTCAACC AGCATTTGAA 003200
003201 TACCGTGTCT CAATGCTGTG CACCAATAAA GAACACAGAA AGTCAGAGTT TTCCAT
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Predicted Small Protein

Name NONHSAT018224_smProtein_569:757
Length 63
Molecular weight 7078.1041
Aromaticity 0.0645161290323
Instability index 45.764516129
Isoelectric point 7.61236572266
Runs 9
Runs residual 0.00847926267281
Runs probability 0.0446917505741
Amino acid sequence MLGCGSLCSGHLQTERQVFCPESTRCIMQRCRKTDLLNFLETGSYSVVQSRVQWCDHSLL
QP
Secondary structure LLLLLLLLLLLLLLEEEEELLLLHHHHHHHHLLLLHHHHHHLLLEEEEEEEEEEEELLLL
LL
PRMN -
PiMo -