NONHSAT018325

From LncRNAWiki
Revision as of 20:28, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT018325

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

742 nt

Genomic location

chr11-:19051244..19051985

Exon number

1

Exons

19051244..19051985

Genome context

Sequence
000001 AAACTAGCAT AGAGAGACTT CCTCTTTCCT GCTGCCAGAT TTTAGATTCC CTGCTGAAAC TCATCAGCTC CTTCCACCCC 000080
000081 ATCTCCATCT CCATCCCCTA CTTCTGTATC ACTATGATAA CTTATTTTTA CATTACGAGT CTAGGCATGC TCAGTGCCAT 000160
000161 TAGCACCAAG CACTGCAGTC CGTACTGTGG TGCATCTGGT ATACTGTTAC CACCACCTGA GACAGAAGTC AGCTGTCATA 000240
000241 TGTGGCATCT TGGTCCTGTC CCTGCTGCTG AGCATCCTTG AAAGGAACTA CTGTAGCTTC TTTTGGGGTA CTCTAATTTT 000320
000321 GCTTGGTTTC TGGCACTTTA TTTCATTACC ATGTGTTCTC TCTGGGTCCA GCCTGTCCCT ACTGGTCAGA CTCCTGTGTG 000400
000401 GCTGCAGGTG CTGCAGCTGA CCAGGCTCTT ATGTGACAAC CTGCTTCTGG TCCTAGTCTT CCACTTCTGC AGCCTACCTG 000480
000481 CTGGTGTTCA ATTGTTTCTT GGGTTGTGGG TTCAAATTGA CTACAATTCA TTCTTTTGTC TTGATTGCAT TGTGTTTATC 000560
000561 TTGACTTGCT AGCAGCTGCA CCAACCCTAT TATTTGCTTT CTTTGTTGGC TCCTTTAGGT AGTATCAATA TGGGAAGATC 000640
000641 CTCAAGCTGG TTCTCCAGAG GGCTCTGCAG GACACTGCTG AAGTATATGA AGGTGGAGGC AGACTTGTTC AGGAAACCCT 000720
000721 GAAGCTGTCG GGAAGCAGAC TG
[back to top]

Predicted Small Protein

Name NONHSAT018325_smProtein_350:571
Length 74
Molecular weight 8346.9955
Aromaticity 0.13698630137
Instability index 43.6123287671
Isoelectric point 4.41229248047
Runs 15
Runs residual 0.0613345117101
Runs probability 0.048271801213
Amino acid sequence MCSLWVQPVPTGQTPVWLQVLQLTRLLCDNLLLVLVFHFCSLPAGVQLFLGLWVQIDYNS
FFCLDCIVFILTC
Secondary structure LEEEEELLLLLLLLHHHHHHHHHHHHHHHLLLLEEEELLLLLLHHHHHHHLEEEEEELLL
EEEELEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL
LLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooo
ooooooooooooo