NONHSAT018636
Revision as of 20:29, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018636 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1332 nt |
Genomic location |
chr11-:31844678..31848210 |
Exon number |
2 |
Exons |
31844678..31845559,31847761..31848210 |
Genome context |
|
Sequence |
000001 CTGGCTGGAG CCTACATAAT CAGAAATGTG CTACTGTTCT TCAAGCCACC GATTAATTTA TCCCAAACTT TAGTCAAATT 000080
000081 TTTATTCCGG TACCTTTTTC CCAGCAGATC CTGCTACGTC TGTCGGGTTT GTAATGTAAT TTGTAATTAC TGCCCTTCAT 000160 000161 GTGGTCCGGT GCCTTGAACC ATCTTTAATT AAAAGCATAA TTAAGGGAAG ATCTAAAGAA AGACAATTAC CAGATGGTCT 000240 000241 TTTTTTTAGA GGCGGTAGTT GCGCAGAGAG GGGCTCGGGG TCTGTCCCCG GGACCCCACG CCTTGGGAGG GGGCGGCGGG 000320 000321 CCCGAACGGC GCCTGCGCAC TGAGGAGGCC TTGGCCTGGC TTGCACCCCG GGTCCCTCCC TCACCCCACC GGGCCACACC 000400 000401 CCGCCACACC CCGCCCTGGC CCTGAGGCTC CACCGAGGCC GCGCCCAGAG GCTCCGTCTT TGCAGGGATT CAAAGCCTTC 000480 000481 GCGGTGTTTA ATTTGGTGGC AGGCTCCAGT AGGCTAAGAC CAGAAGTTCT GGAGCTTGGG GTTGATGCTC TTGTTCTGGG 000560 000561 AGTGTTTGTG GTGACATATT GGGGCCTCGA CAGCAAGGTT GGCCTCTGTC CCACAAGGAC GAGGACTAGG ATGCGGGGTC 000640 000641 CGAGCACCAA GTAGCCAAGC TGAGGAGCGG AGGGAGACGG CTGCACCCAG AGGAAGCCCT CCCTGGCCTG CAGGAGACTG 000720 000721 GACCTCCCTA GCCAGCGGCT GCCTCGCGCC TTGGGCCGCG CCAGGAGGCT GCCCTGCCTG CCTGGAAAGG GCCCTCCCAG 000800 000801 CTTCCTGCGG CCTCTAGCTC CCCGGCCCCG CAAGGACCAG GCCCTATTTT GCTCCCTACT CGCCCTCCTA GGCCAGCTTT 000880 000881 CCACCCAGCA GCCTCAGACC CGGGGACGCT CGCTTCCCGC CCAAACTTTC CTTTCCAGCT GGACTTTGCG GGGAGGCTGG 000960 000961 GACCTGAGTT CAGAGAGGCC CTGCAAGTCT AGATTCTGCT TTAGGATAGG GGTTAGCTTT AAAACCAAAA AGCCAGCCTC 001040 001041 CTTTGGGGTG AAGATGGTTG CAGAGTTTAC AGTCCCTCCA CACTCTTCAA ACCTCACCCA CAGCAGTCCC CAGTCACAGT 001120 001121 CACAACACCT AGACTTCCCC AGAAATCTCA TGGCTTCCCC TAACTTGCAG CCTCACAGGG TGACTCCAGC GCTTTGCTCC 001200 001201 TCTGAAAATC TCACTTGCTC TAGGTGAATG GCCTCAGGTT ATCAAGGACC CACTGGCAAA CTCGTTCCTA CCCATGGGTC 001280 001281 AAGGAAGAGC CCTGGGAACT GTACCAGAAA CAAAGTCTGA GGAGGGAAAA GC |
Predicted Small Protein
Name | NONHSAT018636_smProtein_233:424 |
Length | 64 |
Molecular weight | 6767.7041 |
Aromaticity | 0.0634920634921 |
Instability index | 66.9761904762 |
Isoelectric point | 11.778137207 |
Runs | 6 |
Runs residual | 0.0497246517655 |
Runs probability | 0.0217276099629 |
Amino acid sequence | MVFFLEAVVAQRGARGLSPGPHALGGGGGPERRLRTEEALAWLAPRVPPSPHRATPRHTP PWP |
Secondary structure | LEEEHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLL LLL |
PRMN | - |
PiMo | - |