NONHSAT019018
Revision as of 20:31, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT019018 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2214 nt |
Genomic location |
chr11+:45376833..45387672 |
Exon number |
3 |
Exons |
45376833..45377232,45377249..45378689,45387300..45387672 |
Genome context |
|
Sequence |
000001 gggggatggg aggaggggag gagcagagaa aggagaggag gcggagACGG TTAGTCTAGC CTCTCTGTGG GGCCTCTCTG 000080
000081 CTGGTACCCA GATGCTGAGC GCTGAAATTC TCATCCGCCA CACACAACAT GGCGGCTTCC TGGACCCGCG CCCAATTTTC 000160 000161 GCTTCCGGGA TGGAAGCTAC GTCATTTCCC CCTCTGTTGC CCTAGCGCCC CTTGGAAGCC AAGAATATGA GGAAGTCTTC 000240 000241 TTCCTTCGCG CCTTCTTCTT CCTTACGCTC CAGGGCAGCC TGACAGAGCC GCTCGAAGGC TCTGCTGGCC GCGGCTAGCC 000320 000321 GGTGAGGAGG GTGGGGGGAG GGGCCGTCCC GCGTGTGGGG GAGTCTGAAG GCGACCAACG AGAGGGAGGG CCGGAGCGGG 000400 000401 ATGTCCAGTA AATTGGGGAT GAAAATCCTC CCAGGAACCC GATTATTAAT GGGTTGAGGG AAGTGGCAGG TGCAGCGGTT 000480 000481 GCGCAAAGAC AATGATGCTT AGTAGCCAGG ACTTCATGGC CACAAAATTT GTGTGTAGAG AGGGCCACAG CAGCCTGAAA 000560 000561 ACCATTTTCG TCCCCTTTTA GGTTTACCCA TTCCACTGGA CCCAGCCACC ACCCACTCCT GCTGTCTGGT AAACTTTCCT 000640 000641 CCTGTTTCTG GGGCCATGTC TGGCATGAAG AGTTTTTACT GAATAGTTTT CATTGATCGC AGGCCAGTTC TCTCTTCTCA 000720 000721 CCCCTTTATT GAAGTGACAG TGAAAATCTA AGTGAGAAAG CACTGTTACA GGGGCTGAAA AGGCTACAGG AGACCAGAGC 000800 000801 CATTGACTTT TATTTTTAAA ATGAAGATCT CTTTTACTTG AAGGAACTTA AGAATTTTGG CATTCAAATA GGGGCTGGAA 000880 000881 GACTTGAAAG CAGTAGAAAT TTCACCACAG GTGATAGGAA AGGATGATCA CGAAATGAAT ATCTCCTGAC TTGCACACCT 000960 000961 AGTGAGCAGA GCCAGGAAGG ACCTCCTTCA CCTTAGCATT TGGAACAGGC TGCAAAGTTC ATTCTTCCTC ATAGCAGCCC 001040 001041 CTGCATTCAG TTTGGTTTAG TTGTTTTATG TGGTTTCTAG CCTGATTTTT TTTTTCAGGG TGCAGCAGAA GTCTCAGGTA 001120 001121 GCTGAGAAGT TCATGGAATC TTCTTATTTG CTACACCTTT CACTACTGCT TGTGATATAG TGCAGGGTTG GGATGTGCAG 001200 001201 ACATTTCTCA AGTGCACTGT GTACCTACAC AGCATGCTGC AATTTGGCTA CTGAAGTCAA GAGAAACTGG TTTGAACAAC 001280 001281 TACTGAGTGT AACATAGGAA GCGCATTTCA TTTGATAACA GGAACACAGC TTTTGTGCTA ATAAAATGCT TTGAAAATTA 001360 001361 GTGTGTGGTC TTTAGTAATT AGCATATACA TTTTAGTTAT CCATTGGTTC ATAACAAACG GACTAAATAG GTACCCCACT 001440 001441 GAGTCATTTA TCTAAATGAA AAGTTTGGTT AAATTGTAGT TGTAGGCATT GATCAAAGCT AATGGGAAAA AGAGATTAAG 001520 001521 ATGAAAATCA TGGGATTAAA TTTTTAATTA GTTTGCCCCT TGGACCGTTG CTTGGTATGA CATGGAGATT GATTGGCTAC 001600 001601 TTATGCCTGC CTGGGAAGAT ATGGCTCTGC TACCAAACCT CTGAACGTAA GAGTGTTTTG CAAAAAAACT GAATATTTTA 001680 001681 TTCAGTAATT TTTCACTTTA TTCCTGCTTA ACAAGGAATT GAAAAGGAAG GCAAGGTCTT GGATCTCATA GTTCTTGGTA 001760 001761 TAGTGATAGA TATAAAGTAT GAGATGGGGG CTTCAGTGGG TTCATtaata aatatctcaa attaacatgt ctaagtcaaa 001840 001841 cATTTTCCCC TTCGCCAATC AGCAGTTGCA AAAAGTCCTC CAGGAAAAGT CTGGATGCCA GAAAGCCGTA CCTGAGGGAG 001920 001921 GCAGAATTGC ATGGCAGTGG GCTACATGGG CTCCAGAGTT GGCCAAtgtg tggcctctaa caagtatctt gcctcctcta 002000 002001 tgcctcagtt tccttctctg taaagtgtgg gtgatgatgt ttacttttta gttgtcatga aggtgaggga tgatgatgct 002080 002081 tagcacagtg tctgacactt tacagcaagc gcCACGATCC ACTGTTGTCA TCGGGACTTT TGTCATCCTC AGTGCTGCCA 002160 002161 CACGTTTGCC CTGGGTCCTT GAGCAAATTG GCTCTTTTCT GTGGCCCCCT TGTT |
Predicted Small Protein
Name | NONHSAT019018_smProtein_1826:2050 |
Length | 75 |
Molecular weight | 8455.9796 |
Aromaticity | 0.135135135135 |
Instability index | 52.6486486486 |
Isoelectric point | 9.01995849609 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0743586723978 |
Amino acid sequence | MSKSNIFPFANQQLQKVLQEKSGCQKAVPEGGRIAWQWATWAPELANVWPLTSILPPLCL SFLLCKVWVMMFTF |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLHHHH HHHHHLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTTTTTTTToooo |