NONHSAT021323
Revision as of 20:32, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021323 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
632 nt |
Genomic location |
chr11-:49936565..49937196 |
Exon number |
1 |
Exons |
49936565..49937196 |
Genome context |
|
Sequence |
000001 AAATTTCATG AAGTTACTAG TAATAATTAT ATTTTTAGGT AATTTTGTCC TGAACACTGG AATAAGGACA TACAAAAAGA 000080
000081 CATACGGAAC AAAAGAAAAA TATGACAGAG TTTGTCCTTG TGGGGCTCAC TCAGAGCCCC CAGAGACAGA AAATATTATT 000160 000161 TGTTGTGTTC TTGCTCATCT ACCTTGTGAC AATGGTAGGT GACATACTCA TTGTTGTAAC TGTGGTGGTC AGCCCAACTT 000240 000241 TGGATGCCCC TATGTACTTC TTCCTTGGGT ACTTATCATT AATGGATGCT GTTTAGTCCT CAGGTGAAGC AGCTTGTTTT 000320 000321 GGTTCCATAT TTATATAAAA ATGATCCATT GATCTTCCCA GATGTTTAGA ATATCTGATA ATACCTCTGC TATTTTCAAT 000400 000401 ACCCCCTTCT CATGGCCTTC TAAAAAACAG CCAGGCTCTG CTTTTTATAT GTAAAATCAG CATAATCCAT AATCTATGAA 000480 000481 CTTCAAATAT GCAATGCAGA GCCTGATAGC AAATATTTTG GAATACACCA TTGTCacaaa agatagacag gtgtggtggt 000560 000561 gcatgtctgt ggttccagct gctcaggagg ctgaggttgg aggagttttt gagcccagga ggtcaagact gc |
Predicted Small Protein
Name | NONHSAT021323_smProtein_101:295 |
Length | 65 |
Molecular weight | 7169.6524 |
Aromaticity | 0.125 |
Instability index | 40.1046875 |
Isoelectric point | 4.22552490234 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0810248751424 |
Amino acid sequence | MTEFVLVGLTQSPQRQKILFVVFLLIYLVTMVGDILIVVTVVVSPTLDAPMYFFLGYLSL MDAV |
Secondary structure | LEEEEEEELLLLLLLEEEEEELLEEEELLLLLLLEEEEEEEEELLLLLLHHHHHHHHHHH HHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooooooo oooo |