NONHSAT021367
Revision as of 20:32, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021367 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
923 nt |
Genomic location |
chr11+:55304478..55305400 |
Exon number |
1 |
Exons |
55304478..55305400 |
Genome context |
|
Sequence |
000001 ATGGGGACTT CAAATAATGA GACTGAATTC ATTCTTTTGG GCATTACAAA AAATCCAGAA CTAAGGAAAA TATTCTCTGC 000080
000081 TTTGTTTCTA GCCATGTATG TGACCACAGT GTTGGGAAAT CTATTCATTG TGGTGACTCT GGCTGCAAGT TGGAGTCTGA 000160 000161 GATCACCTAT GTACTTTTCC CTTACTTCCT TGTCTCTCAT GGGTGCCACC TACTCTTCCA TCACTGCCCC TAAGATGACT 000240 000241 GTGGACTCTT TGAGAACACT ACCATTTCCC TTGAAGGCTG CATGACCCAG CTCTTTGCAG AGCATTTCTC TGATGGTGTA 000320 000321 GCGATCATCC TTCTCACTGT GATGGTCTGT GACTGCTATG AGGCCATCAG TAAGCCCCTG CATGACACAA CCATCATGAG 000400 000401 TCCACGGGTG TGCTGCTGTT GGTGGTAGAA GCTTGGGTGG GGGGATTAAC ACATGCCACA ATACAGCTTT TTTTTTTTCA 000480 000481 TATATCAAAT ACCCTTCTGT GGTCCCAATA TTATTGACCA TTTTATATGT GATTTGTTTC CATTGTTAAA ACTTGCTTAC 000560 000561 ATGGACACCC ACATGCTGGG TCTCTTAGTC ATCCTCAACA GTGGGGTGAT GTGTATGGCC ATCTTCCTTA TCCTAATTGC 000640 000641 ATCCTACATT GTCACCCTGT ACTCTCTGAA GTCTTGCAGC TCGGTAGGTT GACGCAACAC ACTTTCCACC TGTGGCTCCC 000720 000721 ACCACACAGT GGTCATCTTG TTCTTCGTGG AGTGTATTTT CTTGTACATA AGACCTGTGG TCACTTACCC CATAGACAAG 000800 000801 GATATGGCTA TTTCCTTTAC TATTGTTGCA CCCATGTTAA ATCCTCTGAT CTATACCCTG AGGGGCATCA AGGTAAAAAA 000880 000881 TGCCATAAGA AAAATGTGGA TGAAACAGGG GACCCTAGGT GGT |
Predicted Small Protein
Name | NONHSAT021367_smProtein_452:691 |
Length | 80 |
Molecular weight | 8967.8121 |
Aromaticity | 0.164556962025 |
Instability index | 42.4582278481 |
Isoelectric point | 5.94281005859 |
Runs | 7 |
Runs residual | 0.0516733136813 |
Runs probability | 0.0361369773135 |
Amino acid sequence | MPQYSFFFFIYQIPFCGPNIIDHFICDLFPLLKLAYMDTHMLGLLVILNSGVMCMAIFLI LIASYIVTLYSLKSCSSVG |
Secondary structure | LLLLLEEEEEEEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHHH HHHHHHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH HHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT TTTTTTTiiiiiiiiiiii |