NONHSAT021717

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT021717

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1654 nt

Genomic location

chr11+:61629445..61632791

Exon number

3

Exons

61629445..61630850,61631179..61631258,61632624..61632791

Genome context

Sequence
000001 GTCGTTTGAA GTGAGACAGG GCAGTCCCTT GGCCTCACCT TCCACCTCGG ACACCTGTGC TGAGCCTGTG GCATGTCACC 000080
000081 ATACCTAAAC TCATGGCAgg atgagcgccc tggcagtggg aacaggccat gcagaggccc cggggaggga gtaagctagg 000160
000161 TCAGGGGGCT GAGTAAAGAC AGGTTCTTAA CCCCATGAGG CTCCGTGGGT GACTGGGTGG GATGGGGGCT TTAGCAGGGG 000240
000241 AGAGTTGGGA CCTGCTTGGA GCGAAGGCCA CTCTGGTTGC CATGGCCACG AGGACAAGCA GGAGACTGTG GGAAGCTGAT 000320
000321 GCTGTGGTCC AGTTGAGACA AGACTTGGGT GGCAGAGAGA CAGTGGACAG GGTGGAGCCG TGAAGTCACC CTCCCAGTAC 000400
000401 ATGAGAGAAG ACGTCCAAGC CCAGTCCCTG ACACCAGTCC AGCCAGAGGC AGGGAGGAGA GCAGAGTGGA GGGACACAGG 000480
000481 ATGACAGTGG GGCGTGGGGA GGCCAGCCTC TGCTGTGAGA GCTCTGAGAT AGGGACGATG GTACCTCTGA CCTTCCCTAC 000560
000561 CCCTCCAAGC CCTCTGTCCT GCTGGAAGGA GATGCCAGGA GGAGACCCAG GTGCTGAGGA GGAGGGACAG GACTGGGGGA 000640
000641 CGGTTGGGGA CCTGGCCCCG GGTTGGGGGC GCACCTTCAG AATCGCCCTT GCCCCACGAG AGGGCTGCTG ACCCCCACCC 000720
000721 CTACCCCATG GCTGCCCCTC AGCAGGAGGG TCCGTTTCTC TCCCGAAAAA CAGGGCACAG TCACTTCCTG ATGCTAAAAC 000800
000801 ACTCAGCATT TCCCTAGAAA CAAAGGCAGC CATGCAAACC CCGAGCAAGC AGGTGGCGTG TAGTTGCCCA TTGCATTTCA 000880
000881 GTGGGCTGCG GTCCAGCTTC TAGAGGCCTG AGTGTGAGGT GTGTGCACAT CTGGGGCACG CACTTGGTGC CAGGGCAGAG 000960
000961 GAGAGGGCAG GTTGCACCTA ACTTCATCTT TCCCCGCAGG ACCTGGCCTG GGCCGTCAGC TACTACATCC GGTTCTTCAT 001040
001041 CACCTACATC CCTTTCTACG GCATCCTGGG AGCCCTCCTT TTCCTCAACT TCATCAGGTG CCTGGGCTTT GCTGATTCAT 001120
001121 CCCTGGGCCC TCCACTGGCA CTGATGATGG CTTTGGCATG AGAAGAGGCT CGGACGGCTC CACTTTGCCT GGGGACCTCC 001200
001201 CATCCTGGCC CCTTGGCAGG GGCTGTCCTG GGCTGGTTGG GAGAGTGGAT CTGTTCCCAC TGTGGCTGGG CCCCCGGAGG 001280
001281 CCCCTGCGCT GAGCTGTGTT CTCTTGCAGG TTCCTGGAGA GCCACTGGTT TGTGTGGGTC ACACAGATGA ATCACATCGT 001360
001361 CATGGAGATT GACCAGGAGG CCTACCGTGA CTGGTTCAGT AGCCAGCTGA CAGCCACCTG CAACGTGGAG CAGTCCTTCT 001440
001441 TCAACGACTG GTTCAGTGGA CACCTTAACT TCCAGATTGA GCACCACCTC TTCCCCACCA TGCCCCGGCA CAACTTACAC 001520
001521 AAGATCGCCC CGCTGGTGAA GTCTCTATGT GCCAAGCATG GCATTGAATA CCAGGAGAAG CCGCTACTGA GGGCCCTGCT 001600
001601 GGACATCATC AGGTGAGGGG TGGAGGTCCA CAGGCGCTGG GCCCTGGGAT CACC
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Predicted Small Protein

Name NONHSAT021717_smProtein_1346:1615
Length 90
Molecular weight 10561.0211
Aromaticity 0.112359550562
Instability index 51.0539325843
Isoelectric point 6.35015869141
Runs 16
Runs residual 0.0365719321436
Runs probability 0.0227157304363
Amino acid sequence MNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKI
APLVKSLCAKHGIEYQEKPLLRALLDIIR
Secondary structure LLLEEELLLHHHHHHHHHHHHHHEELHHHHHHHHHHHHHHLHHHHHHLLLLLLLLLHHHH
HHHHHHHHHHLLLEELLLHHHHHHHHHHL
PRMN -
PiMo -