NONHSAT021717
Revision as of 20:34, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021717 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1654 nt |
Genomic location |
chr11+:61629445..61632791 |
Exon number |
3 |
Exons |
61629445..61630850,61631179..61631258,61632624..61632791 |
Genome context |
|
Sequence |
000001 GTCGTTTGAA GTGAGACAGG GCAGTCCCTT GGCCTCACCT TCCACCTCGG ACACCTGTGC TGAGCCTGTG GCATGTCACC 000080
000081 ATACCTAAAC TCATGGCAgg atgagcgccc tggcagtggg aacaggccat gcagaggccc cggggaggga gtaagctagg 000160 000161 TCAGGGGGCT GAGTAAAGAC AGGTTCTTAA CCCCATGAGG CTCCGTGGGT GACTGGGTGG GATGGGGGCT TTAGCAGGGG 000240 000241 AGAGTTGGGA CCTGCTTGGA GCGAAGGCCA CTCTGGTTGC CATGGCCACG AGGACAAGCA GGAGACTGTG GGAAGCTGAT 000320 000321 GCTGTGGTCC AGTTGAGACA AGACTTGGGT GGCAGAGAGA CAGTGGACAG GGTGGAGCCG TGAAGTCACC CTCCCAGTAC 000400 000401 ATGAGAGAAG ACGTCCAAGC CCAGTCCCTG ACACCAGTCC AGCCAGAGGC AGGGAGGAGA GCAGAGTGGA GGGACACAGG 000480 000481 ATGACAGTGG GGCGTGGGGA GGCCAGCCTC TGCTGTGAGA GCTCTGAGAT AGGGACGATG GTACCTCTGA CCTTCCCTAC 000560 000561 CCCTCCAAGC CCTCTGTCCT GCTGGAAGGA GATGCCAGGA GGAGACCCAG GTGCTGAGGA GGAGGGACAG GACTGGGGGA 000640 000641 CGGTTGGGGA CCTGGCCCCG GGTTGGGGGC GCACCTTCAG AATCGCCCTT GCCCCACGAG AGGGCTGCTG ACCCCCACCC 000720 000721 CTACCCCATG GCTGCCCCTC AGCAGGAGGG TCCGTTTCTC TCCCGAAAAA CAGGGCACAG TCACTTCCTG ATGCTAAAAC 000800 000801 ACTCAGCATT TCCCTAGAAA CAAAGGCAGC CATGCAAACC CCGAGCAAGC AGGTGGCGTG TAGTTGCCCA TTGCATTTCA 000880 000881 GTGGGCTGCG GTCCAGCTTC TAGAGGCCTG AGTGTGAGGT GTGTGCACAT CTGGGGCACG CACTTGGTGC CAGGGCAGAG 000960 000961 GAGAGGGCAG GTTGCACCTA ACTTCATCTT TCCCCGCAGG ACCTGGCCTG GGCCGTCAGC TACTACATCC GGTTCTTCAT 001040 001041 CACCTACATC CCTTTCTACG GCATCCTGGG AGCCCTCCTT TTCCTCAACT TCATCAGGTG CCTGGGCTTT GCTGATTCAT 001120 001121 CCCTGGGCCC TCCACTGGCA CTGATGATGG CTTTGGCATG AGAAGAGGCT CGGACGGCTC CACTTTGCCT GGGGACCTCC 001200 001201 CATCCTGGCC CCTTGGCAGG GGCTGTCCTG GGCTGGTTGG GAGAGTGGAT CTGTTCCCAC TGTGGCTGGG CCCCCGGAGG 001280 001281 CCCCTGCGCT GAGCTGTGTT CTCTTGCAGG TTCCTGGAGA GCCACTGGTT TGTGTGGGTC ACACAGATGA ATCACATCGT 001360 001361 CATGGAGATT GACCAGGAGG CCTACCGTGA CTGGTTCAGT AGCCAGCTGA CAGCCACCTG CAACGTGGAG CAGTCCTTCT 001440 001441 TCAACGACTG GTTCAGTGGA CACCTTAACT TCCAGATTGA GCACCACCTC TTCCCCACCA TGCCCCGGCA CAACTTACAC 001520 001521 AAGATCGCCC CGCTGGTGAA GTCTCTATGT GCCAAGCATG GCATTGAATA CCAGGAGAAG CCGCTACTGA GGGCCCTGCT 001600 001601 GGACATCATC AGGTGAGGGG TGGAGGTCCA CAGGCGCTGG GCCCTGGGAT CACC |
Predicted Small Protein
Name | NONHSAT021717_smProtein_1346:1615 |
Length | 90 |
Molecular weight | 10561.0211 |
Aromaticity | 0.112359550562 |
Instability index | 51.0539325843 |
Isoelectric point | 6.35015869141 |
Runs | 16 |
Runs residual | 0.0365719321436 |
Runs probability | 0.0227157304363 |
Amino acid sequence | MNHIVMEIDQEAYRDWFSSQLTATCNVEQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKI APLVKSLCAKHGIEYQEKPLLRALLDIIR |
Secondary structure | LLLEEELLLHHHHHHHHHHHHHHEELHHHHHHHHHHHHHHLHHHHHHLLLLLLLLLHHHH HHHHHHHHHHLLLEELLLHHHHHHHHHHL |
PRMN | - |
PiMo | - |