NONHSAT021887
Revision as of 20:35, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021887 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3770 nt |
Genomic location |
chr11-:63391556..63395325 |
Exon number |
1 |
Exons |
63391556..63395325 |
Genome context |
|
Sequence |
000001 CTGGTAGCTT TAAGATAGCT TTGCCTTAGC AAGGATCAAA GTCCTACCCA AATATAAAAA ATATCTAGAA GTATCTAAGA 000080
000081 GTTCTTTTTT TCTATTTACC TTGATTAGGA GATAAAAGTT TTATCTGTTA GTTGCTTTTC CTTTTGGAAT TATTGTGGAT 000160 000161 TTTAAAACTT AAAACTTGCC TGCAAGTATT TATATAAACA TTCAGGTATA TAAGCCTTAA TTTCTAAGAT AATTTAACTT 000240 000241 TTGTTATGGG AGGGAGGTAA GAGTGTAAAT TTTATATACA TGAAGGTAAG ATCTGAGTGT AAACTTTACA TACATGAAGT 000320 000321 ATGAATGGAA GGTAGAAAAA AAGTCCCTTT TCGCATGTAA TCTCTTTATC AAAGAATTTT CTTTTGACAC TTTACCACTG 000400 000401 AAGTATTTTT GTAAGTCCTA AATTCGCAGC ATATTGTTTC ATATTTATAT GCCATCTTGC AAATAGTTCT TGCTATTTTA 000480 000481 TTCACTGCTG TTACACTTTA GAAAAATTCC AGCTTGTTTA CTTGCATTTA TCAGTGATGC CAACCAAGCT TTGACTGTTA 000560 000561 ACTTGAAAGC TTGCTTCTGA AATGTTGGTG CATTTTCAGG TGACCTCTTA TCTCTCTGAA AGTTCATACC TATTAGCAGG 000640 000641 CTCTGTAAAT ATTGACATAC TTAGCTTTTA ATACATTCTA TAAGTAAATT TATAGATTTC AGAATAACTT AAAAAATTTA 000720 000721 ATGGTAAGAA GGGGTGATGT GTCGAAAACT CATACTAAAG TATTAGGTCA CTTTAAAAAA AGTGATAATG TATGATTTAA 000800 000801 TGAAATCTTA AGATTCAGTT ACTATTTAAA TTCACCATTT CTGTTTTGGT CTTATAAAGA GACCTTGGTT TAATTATCCA 000880 000881 GAGGAAGTCC TCTTCACCAT TTTTTTTTTT TCTTAGTTCT GCTTCTGGAA AGTGTTTTAT AAAGTTTTCT CAGTGAGGGT 000960 000961 TCTTAAGAGT TTTCTTTGGC CTCTTTTCTC TCAACAGTAA ATTGATGATT TTATATCAGC TTTTTCAATA AAAGATGCAT 001040 001041 TATCATTACT GGCTATAAAT CATCCTGGGG AGATTTATAA CCAGGTTAAA AATAATATCT TTTACTTCTC TCACCTTTTA 001120 001121 CTTGTGGTTC AGATGCTCAG ACTGTGCCTG TTTGCGTCGT GTCTGTTGCT CTGCCGCTTT CCATGCAGGC ATTTTTAATT 001200 001201 TTACACAATC CTAACAATAT ATGGAACTCA TTCCTATGAA TATATAAAAG GAGGCTTCCA AAATTTTCTA TTAAAATATT 001280 001281 TCAGGATAAA TTAAGTGTTG ATAATTTGAA AAAATAATTT CAATGAGCTG CTTATAGTAA AAATGGTAGA ATCAGAGTTT 001360 001361 TCATTCTTTG AGAAATCTTT CTGTAAGATT GGCTCATAGA TAAAATGAGA CAAACTACTA TGTATGATAA AACACCTTCA 001440 001441 GAGTCATGCC TTGTTTTATT TTATTTTATT TTTTGAGACA GAGGTCTCGC TCTGTCGCCC AGGTTGGAGT GCAGTGGTGC 001520 001521 AATCTCGCTC ACTGCAACCT CCACCTCCCA GGTTCAAGCG ATTCTCCTGT CTCAGCTTCC TGAGTAGCTG GGACTACAGG 001600 001601 TGTACACCAC CACGCCTGGC TAATTTTTGT TTTTTTACTA GAGGTGGGGT TTTGCCATGT TGGCCAGGCT GGTCTCAAAC 001680 001681 TCCTGACCTC AGGTGATCCA CTCCCCCCAG CCTCCCAAAG TGCTGGGATT ACAGGCATGA GCCACCCCGC CCAGCTGAGT 001760 001761 CATGCCTTAT TTTCGTAGTA TACCAAGAAA TGTTCTATGG AAGTTTACGT TTTAACACCT CTTTTATACT TGGTAAAATT 001840 001841 GCCTGTGTTT CGCTTTATTC CTTTTTTTTT TTGAGACGGA CTCTTGTACT GTCACCCAGG CTGAAGTGCA GTGGCGCAAT 001920 001921 CTTGGCTCAC TACAACCTCC GCCTCCTGGG TTCAAGTGAT TCTTTTGCCT CAGCCTCCCA AGTAGCAGGG ATTACAGGCA 002000 002001 TGTGCCACCA CACCCGGCTT ATTTTTGTAT TTTTAGTAGA GACAGGGCTT CGCCATGTTG ACCAGGCTGG TCTCAACTCC 002080 002081 TCTGGGAATC CGCCTGTCTT GGCCTTCCAG GGTGCTGGGA TTACAGGCGT GAGCCACTGG AACCTGGCCT TGTTTTGCTT 002160 002161 TATTTTTTCT CTTACATGAA GTAAAGCGCT TTGGTCAAAC ACACAAAAAT ACTGCCTTGT ACTGGTGGTT GGTTTCATTA 002240 002241 GTGGATCACA CACAGTGTTC TACTTGGCTT GTAAAATGGT GCCTTGGATA GGGTGAGTTT GGATAAGTAT GTATGTATGT 002320 002321 ATGAGTTATA GCAAAATTAA GTAGATTGAA TCAAGTCCAT GCAAAAGCAA TAAAACAGTT TTAATTTTTT AATTTTTTAA 002400 002401 AAATTAAAAC TTTAATAAAA CAGTTTTTAA TTTTTTGCTA GGTTCTTTTA AAAAATGATG TAACTTACAT GGAAGTCTTC 002480 002481 ACAGGACTTT TTTCTTTCCT GGAACTATTG AAATGTAATT TAGGATGATT TGATCTTCCA TCTCAAGTTG TCAACATGGC 002560 002561 TGTGTCATTC TGGCTTACAT ATGTTTTATT TAACAAAATT CTAGTCAAGG GATAAGGGCA TAATGAAGAC AAGCTTCAGT 002640 002641 TATGAAAGTA CAAACTATTT GTGTGATTAA TTTTTAAAAA TGACATTAAG AAGCCCATTG TAAAATAATA TTTGCAGTCA 002720 002721 AATGGTTTTT CTTGCTGTAA GTCCTGTTGT AGCTATGTTT AGGGTAGTGG TTCTCATCTA CCTTGGAGTG CATAAGACTT 002800 002801 ACCTAGCAGG CTTGTTTAAA AAGTTCAGAT TCCTAGCTTT GTACCCAGGG ATTGCCTCAG GTGGTATGGG CTGTGGTCCT 002880 002881 GGAGTCATCA CTTTTATAAA TAGTGGTTCA GAGACCACAG AGAGAGACTG CTTCATCGAA TGGGAAGTAC CAAGGAGAAA 002960 002961 GTACAATTCA GTATTGTCTG GAGGCAAGTG GACACTTTGT ACCTGAGGTT TAGAATAGGT GGTCTCTTGC CAGTACAATC 003040 003041 CCCAGGCGTT TTCTGTGTTC AGAAGTAGTA AGAATGCCTT TAATTCAGAG GATTATCTAA GCTCTTTAAA GCTGTTTTTC 003120 003121 TCCATTGTCA TAGTGCCTTC TCTGAAAAAT GAATGTACAG GTATCCTATT TTCTAATGTA ATTAGGATTT TTTAAAAGCA 003200 003201 ATTTTTGATA GTTTTTCTTT TAAAAAGTAA AATTCAGCAC TGTGACTTGA ACCCCCAAAT CTTTCACATA CAGGTGAAAC 003280 003281 ATTAAGCCAC AAATAAAAAT AATGAACAAG AAAGAAGACA AGATCCTAAT TCCTGTCATT AGTGACCTAA GTACCCCATA 003360 003361 TCAGAAACTT TGCAAAACAG ATCTAGGGAC AGAAGGGCTT TGAAAGACAT TTTTCTTTGG GGCAAATTTC GTGTGCCAGA 003440 003441 ACTACAGTTT AAATGTTTTT ATGAGCAAGG GAAGGTAGCA TTGATTCCCA TAGCTTTCTA ATTAGATACA TGCTGTCATG 003520 003521 GATGTAAGCC TTAAAGGAGT TAATACTAAT CTTGTACATA CACAAATTTT CCTCAGGTTT TTTTATTTTA AAAAATGATT 003600 003601 TGTTAAAAGT ACTGTCTGCT AGACCCTTGC CTTTGAGTGG CTTTGAAACT TAATATAGTT TTTAAAAAGT GCAATGGGAT 003680 003681 GAGATTATGC TATTAGTATA TTAAAAGCAT GTTTCTGTTT TACTCCAATT TGTAAGATCA TTTAATGGAA TAAAGATCAC 003760 003761 AACACCATGT |
Predicted Small Protein
Name | NONHSAT021887_smProtein_1445:1582 |
Length | 46 |
Molecular weight | 5023.753 |
Aromaticity | 0.111111111111 |
Instability index | 83.1957777778 |
Isoelectric point | 8.68377685547 |
Runs | 6 |
Runs residual | 0.0289141414141 |
Runs probability | 0.0184449155037 |
Amino acid sequence | MPCFILFYFLRQRSRSVAQVGVQWCNLAHCNLHLPGSSDSPVSAS |
Secondary structure | LLEEEEEEHHHHLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |