NONHSAT022142

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT022142

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5259 nt

Genomic location

chr11+:65266529..65273881

Exon number

5

Exons

65266529..65269474,65270119..65270591,65271200..65271677,65271797..65273133,65273857..65273881

Genome context

Sequence
000001 GCCAGCGCAG GGGCTTCTGC TGAGGGGGCA GGCGGAGCTT GAGGAAACCG CAGATAAGTT TTTTTCTCTT TGAAAGATAG 000080
000081 AGATTAATAC AACTACTTAA AAAATATAGT CAATAGGTTA CTAAGATATT GCTTAGCGTT AAGTTTTTAA CGTAATTTTA 000160
000161 ATAGCTTAAG ATTTTAAGAG AAAATATGAA GACTTAGAAG AGTAGCATGA GGAAGGAAAA GATAAAAGGT TTCTAAAACA 000240
000241 TGACGGAGGT TGAGATGAAG CTTCTTCATG GAGTAAAAAA TGTATTTAAA AGAAAATTGA GAGAAAGGAC TACAGAGCCC 000320
000321 CGAATTAATA CCAATAGAAG GGCAATGCTT TTAGATTAAA ATGAAGGTGA CTTAAACAGC TTAAAGTTTA GTTTAAAAGT 000400
000401 TGTAGGTGAT TAAAATAATT TGAAGGCGAT CTTTTAAAAA GAGATTAAAC CGAAGGTGAT TAAAAGACCT TGAAATCCAT 000480
000481 GACGCAGGGA GAATTGCGTC ATTTAAAGCC TAGTTAACGC ATTTACTAaa cgcagacgaa aatggaaaga ttaattggga 000560
000561 gtggtaggat gaaacaattt ggagaagata gaagtttgaa gtggaaaact ggaagacaga agtacgggaa ggcgaagaaa 000640
000641 agaatagaga agatagggaa attagaagat aaaaacatac ttttagaaga aaaaagataa atttaaacct gaaaagtagg 000720
000721 aagcagaaga aaaaagacaa gctaggaaac aaaaagctaa gggcaaaatg tacaaactta gaagaaaatt ggaagataga 000800
000801 aacaagatag aaaatgaaaa tattgtcaag agtttcagat agaaaatgaa aaacaagcta agacaagtat tggagaagta 000880
000881 tagaagatag aaaaatataa agccaaaaat tggataaaat agcactgaaa aaatgaggaa attattggta accaatttaT 000960
000961 TTTAAAAGCC CATCAATTTA ATTTCTGGTG GTGCAGAAGT TAGAAGGTAA AGCTTGAGAA GATGAGGGTG TTTACGTAGA 001040
001041 CCAGAACCAA TTTAGAAGAA TACTTGAAGC TAGAAGGGGA AGTTGGTTAA AAATCACATC AAAAAGCTAC TAAAAGGACT 001120
001121 GGTGTAATTT AAAAAAAACT AAGGCAGAAG GCTTTTGGAA GAGTTAGAAG AATTTGGAAG GCCTTAAATA TAGTAGCTTA 001200
001201 GTTTGAAAAA TGTGAAGGAC TTTCGTAACG GAAGTAATTC AAGATCAAGA GTAATTACCA ACTTAATGTT TTTGCATTGG 001280
001281 ACTTTGAGTT AAGATTATTT TTTAAATCCT GAGGACTAGC ATTAATTGAC AGCTGACCCA GGTGCTACAC AGAAGTGGAT 001360
001361 TCAGTGAATC TAGGAAGACA GCAGCAGACA GGATTCCAGG AACCAGTGTT TGATGAAGCT AGGACTGAGG AGCAAGCGAG 001440
001441 CAAGCAGCAG TTCGTGGTGA AGATAGGAAA AGAGTCCAGG AGCCAGTGCG ATTTGGTGAA GGAAGCTAGG AAGAAGGAAG 001520
001521 GAGCGCTAAC GATTTGGTGG TGAAGCTAGG AAAAAGGATT CCAGGAAGGA GCGAGTGCAA TTTGGTGATG AAGGTAGCAG 001600
001601 GCGGCTTGGC TTGGCAACCA CACGGAGGAG GCGAGCAGGC GTTGTGCGTA GAGGATCCTA GACCAGCATG CCAGTGTGCC 001680
001681 AAGGCCACAG GGAAAGCGAG TGGTTGGTAA AAATCCGTGA GGTCGGCAAT ATGTTGTTTT TCTGGAACTT ACTTATGGTA 001760
001761 ACCTTTTATT TATTTTCTAA TATAATGGGG GAGTTTCGTA CTGAGGTGTA AAGGGATTTA TATGGGGACG TAGGCCGATT 001840
001841 TCCGGGTGTT GTAGGTTTCT CTTTTTCAGG CTTATACTCA TGAATCTTGT CTGAAGCTTT TGAGGGCAGA CTGCCAAGTC 001920
001921 CTGGAGAAAT AGTAGATGGC AAGTTTGTGG GTTTTTTTTT TTTACACGAA TTTGAGGAAA ACCAAATGAA TTTGATAGCC 002000
002001 AAATTGAGAC AATTTCAGCA AATCTGTAAG CAGTTTGTAT GTTTAGTTGG GGTAATGAAG TATTTCAGTT TTGTGAATAG 002080
002081 ATGACCTGTT TTTACTTCCT CACCCTGAAT TCGTTTTGTA AATGTAGAGT TTGGATGTGT AACTGAGGCG GGGGGGAGTT 002160
002161 TTCAGTATTT TTTTTTGTGG GGGTGGGGGC AAAATATGTT TTCAGTTCTT TTTCCCTTAG GTCTGTCTAG AATCCTAAAG 002240
002241 GCAAATGACT CAAGGTGTAA CAGAAAACAA GAAAATCCAA TATCAGGATA ATCAGACCAC CACAGGTTTA CAGTTTATAG 002320
002321 AAACTAGAGC AGTTCTCACG TTGAGGTCTG TGGAAGAGAT GTCCATTGGA GAAATGGCTG GTAGTTACTC TTTTTTCCCC 002400
002401 CCACCCCCTT AATCAGACTT TAAAAGTGCT TAACCCCTTA AACTTGTTAT TTTTTACTTG AAGCATTTTG GGATGGTCTT 002480
002481 AACAGGGAAG AGAGAGGGTG GGGGAGAAAA TGTTTTTTTC TAAGATTTTC CACAGATGCT ATAGTACTAT TGACAAACTG 002560
002561 GGTTAGAGAA GGAGTGTACC GCTGTGCTGT TGGCACGAAC ACCTTCAGGG ACTGGAGCTG CTTTTATCCT TGGAAGAGTA 002640
002641 TTCCCAGTTG AAGCTGAAAA GTACAGCACA GTGCAGCTTT GGTTCATATT CAGTCATCTC AGGAGAACTT CAGAAGAGCT 002720
002721 TGAGTAGGCC AAATGTTGAA GTTAAGTTTT CCAATAATGT GACTTCTTAA AAGTTTTATT AAAGGGGAGG GGCAAATATT 002800
002801 GGCAATTAGT TGGCAGTGGC CTGTTACGGT TGGGATTGGT GGGGTGGGTT TAGGTAATTG TTTAGTTTAT GATTGCAGAT 002880
002881 AAACTCATGC CAGAGAACTT AAAGTCTTAG AATGGAAAAA GTAAAGAAAT ATCAACTTCC AAGTTGATAA CATCTTCTGA 002960
002961 GTCATAACCA GCCTGGCAGT ATGATGGCCT AGATGCAGAG AAAACAGCTC CTTGGTGAAT TGATAAGTAA AGGCAGAAAA 003040
003041 GATTATATGT CATACCTCCA TTGGGGAATA AGCATAACCC TGAGATTCTT ACTACTGATG AGAACATTAT CTGCATATGC 003120
003121 CAAAAAATTT TAAGCAAATG AAAGCTACCA ATTTAAAGTT ACGGAATCTA CCATTTTAAA GTTAATTGCT TGTCAAGCTA 003200
003201 TAACCACAAA AATAATGAAT TGATGAGAAA TACAATGAAG AGGCAATGTC CATCTCAAAA TACTGCTTTT ACAAAAGCAG 003280
003281 AATAAAAGCG AAAAGAAATG AAAATGTTAC ACTACATTAA TCCTGGAATA AAAGAAGCCG AAATAAATGA GAGATGAGTT 003360
003361 GGGATCAAGT GGATTGAGGA GGCTGTGCTG TGTGCCAATG TTTCGTTTGC CTCAGACAGA AACTTTGTCT GCGAACACTC 003440
003441 TTTAATGGAC CAGATCAGGA TTTGAGCGGA AGAACGAATG TAACTTTAAG GCAGGAAAGA CAAATTTTAT TCTTCATAAA 003520
003521 GTGATGAGCA TATAATAATT CCAGGCACAT GGCAATAGAG GCCCTCTAAA TAAGGAATAA ATAACCTCTT AGACAGGTGG 003600
003601 GAGATTATGA TCAGAGTAAA AGGTAATTAC ACATTTTATT TCCAGAAAGT CAGGGGTCTA TAAATTGACA GTGATTAGAG 003680
003681 TAATACTTTT TCACATTTCC AAAGTTTGCA TGTTAACTTT AAATGCTTAC AATCTTAGAG TGGTAGGCAA TGTTTTACAC 003760
003761 TATTGACCTT ATATAGGGAA GGGAGGGGGT GCCTGTGGGG TTTTAAAGAA TTTTCCTTTG CAGAGGCATT TCATCCTTCA 003840
003841 TGAAGCCATT CAGGATTTTG AATTGCATAT GAGTGCTTGG CTCTTCCTTC TGTTCTAACT TCACAGAGAA TGCAGTTGTC 003920
003921 TTGACTTCAG GTCTGTCTGT TCTGTTGGCA AGTAAATGCA GTACTGTTCT GATCCCGCTG CTATTAGAAT GCATTGTGAA 004000
004001 ACGACTGGAG TATGATTAAA AGTTGTGTTC CCCAATGCTT GGAGTAGTGA TTGTTGAAGG AAAAAATCCA GCTGAGTGAT 004080
004081 AAAGGCTGAG TGTTGAGGAA ATTTCTGCAG TTTTAAGCAG TCGTATTTGT GATTGAAGCT GAGTACATTT TGCTGGTGTA 004160
004161 TTTTTAGGTA AAATGCTTTT TGTTCATTTC TGGTGGTGGG AGGGGACTGA AGCCTTTAGT CTTTTCCAGA TGCAACCTTA 004240
004241 AAATCAGTGA CAAGAAACAT TCCAAACAAG CAACAGTCTT CAAGAAATTA AACTGGCAAG TGGAAATGTT TAAACAGTTC 004320
004321 AGTGATCTTT AGTGCATTGT TTATGTGTGG GTTTCTCTCT CCCCTCCCTT GGTCTTAATT CTTACATGCA GGAACACTCA 004400
004401 GCAGACACAC GTATGCGAAG GGCCAGAGAA GCCAGACCCA GTAAGAAAAA ATAGCCTATT TACTTTAAAT AAACCAAACA 004480
004481 TTCCATTTTA AATGTGGGGA TTGGGAACCA CTAGTTCTTT CAGATGGTAT TCTTCAGACT ATAGAAGGAG CTTCCAGTTG 004560
004561 AATTCACCAG TGGACAAAAT GAGGAAAACA GGTGAACAAG CTTTTTCTGT ATTTACATAC AAAGTCAGAT CAGTTATGGG 004640
004641 ACAATAGTAT TGAATAGATT TCAGCTTTAT GCTGGAGTAA CTGGCATGTG AGCAAACTGT GTTGGCGTGG GGGTGGAGGG 004720
004721 GTGAGGTGGG CGCTAAGCCT TTTTTTAAGA TTTTTCAGGT ACCCCTCACT AAAGGCACCG AAGGCTTAAA GTAGGACAAC 004800
004801 CATGGAGCCT TCCTGTGGCA GGAGAGACAA CAAAGCGCTA TTATCCTAAG GTCAAGAGAA GTGTCAGCCT CACCTGATTT 004880
004881 TTATTAGTAA TGAGGACTTG CCTCAACTCC CTCTTTCTGG AGTGAAGCAT CCGAAGGAAT GCTTGAAGTA CCCCTGGGCT 004960
004961 TCTCTTAACA TTTAAGCAAG CTGTTTTTAT AGCAGCTCTT AATAATAAAG CCCAAATCTC AAGCGGTGCT TGAAGGGGAG 005040
005041 GGAAAGGGGG AAAGCGGGCA ACCACTTTTC CCTAGCTTTT CCAGAAGCCT GTTAAAAGCA AGGTCTCCCC ACAAGCAACT 005120
005121 TCTCTGCCAC ATCGCCACCC CGTGCCTTTT GATCTAGCAC AGACCCTTCA CCCCTCACCT CGATGCAGCC AGTAGCTTGG 005200
005201 ATCCTTGTGG GCATGATCCA TAATCGGTTT CAAGGTAATA GCCTGCAGCT GGTGTTTTG
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Predicted Small Protein

Name NONHSAT022142_smProtein_1667:1810
Length 48
Molecular weight 5699.6696
Aromaticity 0.170212765957
Instability index 45.444893617
Isoelectric point 5.60491943359
Runs 4
Runs residual 0.081170212766
Runs probability 0.0421082847552
Amino acid sequence MPVCQGHRESEWLVKIREVGNMLFFWNLLMVTFYLFSNIMGEFRTEV
Secondary structure LLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEELL
PRMN<